PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106299.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family bHLH
Protein Properties Length: 330aa    MW: 37085 Da    PI: 7.0633
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106299.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.55.7e-14131182155
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +r++h  +Er+RR+++N+ f+ Lr+++P++   + ++ + a+i+  A++++k+L+
  XP_010106299.1 131 QRMTHITVERNRRKQMNDYFAVLRSMMPSS---YVQRGDQASIVGGAINFVKELE 182
                     79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.94E-13129186No hitNo description
SuperFamilySSF474591.83E-17130205IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.996130181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-13131196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.3E-11131182IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.4E-10136187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MALETVVFEQ DPFSCSRKDL QYALGGGGTV LPWSYEHDYG EDDVKNHNKI LVHNINTCVG  60
QGSNVMNAKY LDYCTSSSSM VQSVNNNINN GDIRDAKISP AGTSTAAAAT VGRRKQRRTR  120
SVKNKEEVEN QRMTHITVER NRRKQMNDYF AVLRSMMPSS YVQRGDQASI VGGAINFVKE  180
LEQLLQSLEA HKRINQHELD HSTVPSLFSD FFIFPQYLTF SVNNKSVTEP KSTAEKRCAI  240
ADVEVTMVES HANIKVLLKR HQKQLVKMVV GLQFLRLVVL HLNVTTVDSM VLYSFSVKVE  300
DDSELTSVNE IAASVYEMVG RIQEEADLIS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1131142RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106299.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106299.10.0transcription factor bHLH96
SwissprotQ9C7T43e-78BH096_ARATH; Transcription factor bHLH96
TrEMBLW9S1T40.0W9S1T4_9ROSA; Uncharacterized protein
STRINGXP_010106299.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.12e-76bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]