PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010106246.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 506aa    MW: 55059.5 Da    PI: 9.4563
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010106246.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.23.1e-0589111123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C++C+k F r  nL+ H r H
  XP_010106246.1  89 FICEICNKGFQRDQNLQLHRRGH 111
                     89*******************88 PP
2zf-C2H212.70.00037165187123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC +C+k++  +s+ k H +t+
  XP_010106246.1 165 WKCDKCSKRYAVQSDWKAHSKTC 187
                     58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.3E-588111IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-788111No hitNo description
PROSITE profilePS5015710.84589111IPR007087Zinc finger, C2H2
PfamPF121716.1E-589111IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.02289111IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028091111IPR007087Zinc finger, C2H2
SMARTSM00355250130160IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.3E-4152186IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.09E-7160185No hitNo description
SMARTSM00355140165185IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 506 aa     Download sequence    Send to blast
MMLFQHQQPP QADENMSNLT SASGEASVSS GNKNEIGNNN NNYPQQYFSP VQAQTQQPPK  60
KKRNLPGNPD PDAEVIALSP KSLLATNRFI CEICNKGFQR DQNLQLHRRG HNLPWKLKQR  120
ASKEVKKKVY VCPEASCVHH DPARALGDLT GVKKHFCRKH GEKKWKCDKC SKRYAVQSDW  180
KAHSKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAEES VRAMTTNNPA GPVVLLNNPN  240
SSSSTLSHHH MINLQQTQLD NLNAFSLKKQ HQDFSSSTAA VTATTLPPWL GPAQIDLSSS  300
SPSIFSNTRS AITTTLDHHH EDFTISNPNP SPLGPAANLP ATTFQTLQSP PPPPSAHMSA  360
TALLQKAAQM GATMSGSKAT VACRPHQAHV SSPSSAAVTT NSSTTATGLN LSSSRDHHQH  420
YQKDQTVTHA LAPNSFLQDM MMSSLPSVNG GNTTGRGDNG GSGEGLTRDF LGLRAFSHSD  480
ILSIAGLGNG INISRDHQSN QPQKPW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-34161228370Zinc finger protein JACKDAW
5b3h_F2e-34161228370Zinc finger protein JACKDAW
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010106246.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010106246.20.0protein indeterminate-domain 7
TrEMBLW9S1P30.0W9S1P3_9ROSA; Uncharacterized protein
STRINGXP_010106246.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-119indeterminate(ID)-domain 7