PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105978.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 374aa    MW: 42646.4 Da    PI: 4.8078
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105978.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.42.1e-073243562254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_010105978.1 324 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 356
                     58*****************************87 PP
2ELK27.38.5e-10277297121
             ELK   1 ELKhqLlrKYsgyLgsLkqEF 21 
                     ELKh+L+++Y+++++++++E+
  XP_010105978.1 277 ELKHELKQGYKEKIVDIREEI 297
                     9*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012555.4E-18109153IPR005540KNOX1
PfamPF037901.8E-17111152IPR005540KNOX1
SMARTSM012563.5E-24164220IPR005541KNOX2
PfamPF037911.1E-16169219IPR005541KNOX2
PfamPF037892.7E-6277297IPR005539ELK domain
PROSITE profilePS512139.969277297IPR005539ELK domain
SMARTSM011880.0011277298IPR005539ELK domain
PROSITE profilePS5007111.677297360IPR001356Homeobox domain
SuperFamilySSF466893.46E-16299363IPR009057Homeodomain-like
SMARTSM003898.2E-11299364IPR001356Homeobox domain
CDDcd000862.08E-11300361No hitNo description
Gene3DG3DSA:1.10.10.604.0E-25304362IPR009057Homeodomain-like
PfamPF059201.0E-17317356IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MAFHNHIISH EMVFQEPNFA EQPLSLSASD NDDAGVGAGA PTWLNNSVFR QHNLLHLLSE  60
SEPQNDDVLA GKRGGDCGDR RSDRRREDGF GDEEDDDDEE VEDGESEGLR YKADILRHPL  120
YEQLLSAHVS CLRIATPVDQ LPRIDEQLSQ SQRVVRKYSE LGTDGGIQVV DEKELDQFMT  180
NYVILLCSLK QQLQQHVRVH AMEAVMACWE LEQALQSLTG VSPGEGTGAT MSDDIDDQVD  240
SDMNFYDGSL DGHDSMGFGP LIPTETERSL MERVREELKH ELKQGYKEKI VDIREEIIRK  300
RKAGKLPGDT TSLLKAWWQS HSKWPYPTEE DKARLVQETG LQLKQINNWF INQRKRNWHN  360
NLSPSPSLKS KRKR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1353373RKRNWHNNLSPSPSLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105978.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027714.10.0homeobox protein knotted-1-like 2 isoform X1
RefseqXP_024027715.10.0homeobox protein knotted-1-like 2 isoform X1
SwissprotP480001e-157KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLW9RSQ80.0W9RSQ8_9ROSA; Homeobox protein knotted-1-like 3
STRINGXP_010105978.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-148KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]