PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105873.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 305aa    MW: 34539.8 Da    PI: 4.7782
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105873.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.14.6e-28958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  XP_010105873.1  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                    79********************************************9997 PP
2K-box23.72.1e-09931601178
           K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                      ++ e+lqqe+ +L++++++ ++++R +  + L+  s++e+ + e++L + l+++ ++K+ ll +q++
  XP_010105873.1  93 MQNKEELQQEICRLQQQLQMAEEQIRMYEPDPLKITSMEEMDSCEKNLVDTLTTVMQRKEYLLSNQLS 160
                     57889************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.6E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.857161IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-29280IPR002100Transcription factor, MADS-box
CDDcd002656.05E-36275No hitNo description
PRINTSPR004042.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003195.8E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004042.9E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.7E-694161IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
RRIEDVFTRF INLPDQEREH AIIFPDHRQH PDMQNKEELQ QEICRLQQQL QMAEEQIRMY  120
EPDPLKITSM EEMDSCEKNL VDTLTTVMQR KEYLLSNQLS SYEPPGVPQV FQGPYETAIE  180
SWIPNSNAQI FDASSSLDPL TELGSTVYDP FAQGTSSNVD PNSLEGGCHV PNAGDQKLQA  240
WPQPYPPTAT AHPSLMPPTF YSQIEGDQHA LGTSNMAEII PHQQIEIPIS SLNVGPRNFG  300
NEASN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16190193MEF2 CHIMERA
6bz1_B1e-16190193MEF2 CHIMERA
6bz1_C1e-16190193MEF2 CHIMERA
6bz1_D1e-16190193MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105873.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024027649.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM463e-96AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLW9SH440.0W9SH44_9ROSA; MADS-box transcription factor 13
STRINGXP_010105873.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-84AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]