PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010105605.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

NAC

Protein Properties

Length: 446aa MW: 50667.3 Da PI: 6.1995

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010105605.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.8	1.7e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k++l e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nratk+gyWkatgkd++v XP_010105605.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIDL-EIIPEVDLYKCEPWDLPgKsLLPSKDLEWYFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVN 99 79**************************.99***********6434555777*********************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s +++ vg+kktLv+y+grap+g++t Wvmheyrl XP_010105605.1 100 S-QTRSVGMKKTLVYYRGRAPHGSRTGWVMHEYRL 133 .9999**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	7.32E-65	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.565	6	156	IPR003441	NAC domain
Pfam	PF02365	1.3E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 446 aa Download sequence Send to blast
MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH 120 GSRTGWVMHE YRLDERECET PSGLQDAYAL CRVFKKSTCA PKIGEHYATT STNHHMISTN 180 HIASDHSSSI EIYSDGRCDD FESSNYPMPP DSMAVSVLHR SASHLNDHAG GRFTSDANIY 240 TQFLSHHEDP FNTFSSPSFP NYGSTSYHPS KVDVALECAR LQHRLSLPPL EVEDFHQAIG 300 INDYKMLQSN STARHAADQT SANETDILQE ILSVAHVSQE LINQPSCNFA DHTTWGGNYA 360 PAADDFTFMV GREAQYCGTQ QAAYSNNDMN SMRYMQEKSW ENPMINTRLV EIGDLEEDFK 420 TDQRAVENLR WVGMSSKDVE DEVLNV

Sequence ? help Back to Top

Protein Sequence Length: 446 aa Download sequence Send to blast

MAPVSLPPGF RFHPTDEELV AYYLKRKING RKIDLEIIPE VDLYKCEPWD LPGKSLLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVNS QTRSVGMKKT LVYYRGRAPH  120
GSRTGWVMHE YRLDERECET PSGLQDAYAL CRVFKKSTCA PKIGEHYATT STNHHMISTN  180
HIASDHSSSI EIYSDGRCDD FESSNYPMPP DSMAVSVLHR SASHLNDHAG GRFTSDANIY  240
TQFLSHHEDP FNTFSSPSFP NYGSTSYHPS KVDVALECAR LQHRLSLPPL EVEDFHQAIG  300
INDYKMLQSN STARHAADQT SANETDILQE ILSVAHVSQE LINQPSCNFA DHTTWGGNYA  360
PAADDFTFMV GREAQYCGTQ QAAYSNNDMN SMRYMQEKSW ENPMINTRLV EIGDLEEDFK  420
TDQRAVENLR WVGMSSKDVE DEVLNV

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-58	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-58	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-58	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-58	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-58	1	162	15	174	NAC domain-containing protein 19
3swm_B	2e-58	1	162	15	174	NAC domain-containing protein 19
3swm_C	2e-58	1	162	15	174	NAC domain-containing protein 19
3swm_D	2e-58	1	162	15	174	NAC domain-containing protein 19
3swp_A	2e-58	1	162	15	174	NAC domain-containing protein 19
3swp_B	2e-58	1	162	15	174	NAC domain-containing protein 19
3swp_C	2e-58	1	162	15	174	NAC domain-containing protein 19
3swp_D	2e-58	1	162	15	174	NAC domain-containing protein 19
4dul_A	2e-58	1	162	12	171	NAC domain-containing protein 19
4dul_B	2e-58	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC045, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010105605.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010105605.2	0.0	NAC domain-containing protein 86, partial
Swissprot	Q9FFI5	1e-105	NAC86_ARATH; NAC domain-containing protein 86
TrEMBL	W9S2I6	0.0	W9S2I6_9ROSA; NAC domain-containing protein 78
STRING	XP_010105605.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4421	34	60

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-136	NAC domain containing protein 28

Link Out ? help Back to Top
Entrez Gene	21384596

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]