PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105604.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LFY
Protein Properties Length: 433aa    MW: 48173 Da    PI: 6.9546
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105604.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY571.32.6e-17414091384
         FLO_LFY   1 mdpeafsaslfkwdpraaaaapparlleeaavseapleaaaaaaarklreleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslse 95 
                     mdp+af+aslfkwdpr  ++ap+   +   a++ea ++       ++l +leelf+ayG+ry+t+akiaelGft+stLv+m+deeldd+m+sls+
  XP_010105604.1   1 MDPDAFPASLFKWDPRGPMVAPAVGPA---AAAEAGSRGGGGYWGEQLGGLEELFQAYGIRYYTAAKIAELGFTASTLVNMRDEELDDMMSSLSH 92 
                     9***************98877764333...33344445677888999************************************************ PP

         FLO_LFY  96 ifrldllvGeryGikaavraerrrlee..eeaekkrrkllsedeetaldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkka 188
                     ifr+dllvGeryG+kaavraerrrle      +  rr   ++  ++++da sqeglseepvq+e+e++gsgg+g ge+++++++++++   ++++
  XP_010105604.1  93 IFRWDLLVGERYGVKAAVRAERRRLEVdlLYYDGDRRIAAADTPTNVIDAHSQEGLSEEPVQQEREMVGSGGGGGGERKKKQQRRSSKGVAHMRR 187
                     *************************985523456666555666677************************9998777777666654444444443 PP

         FLO_LFY 189 skkkqkrkkkkelkse........ededeeeeededeeg...............sgedgeerqrehPfivtepgevargkknGLDYLfdLyeqCr 260
                           + ++ +++ e        +dedeee       +               ++ ++ erqrehPfivtepgevargkknGLDYLf+LyeqCr
  XP_010105604.1 188 MLMLDPNDSSGMMMLEendaaaedQDEDEEE-------NdvvnnsnnsykgkqlGRMSSCERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCR 275
                     3332222222222222334444322222222.......1223334455555554444555*********************************** PP

         FLO_LFY 261 efLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafker.........genvGawrqacykplva 346
                     +fLlqvq+iakerGekcPtkvtn+vfr+akkagas+inkPkmrhYvhCYalhcLdee snalrra+ker         genvGa rqacy+plva
  XP_010105604.1 276 QFLLQVQTIAKERGEKCPTKVTNEVFRFAKKAGASHINKPKMRHYVHCYALHCLDEEGSNALRRAYKERggrraykegGENVGAGRQACYNPLVA 370
                     ****************************************************************9999844444444459*************** PP

         FLO_LFY 347 iaarq.gwdidavfnahprLsiWYvPtkLrqLChlersk 384
                     iaarq +wdid++fnahprLsiWYvPtkLrqLCh+er++
  XP_010105604.1 371 IAARQaAWDIDSIFNAHPRLSIWYVPTKLRQLCHAERNA 409
                     *987637******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016983.2E-1441345IPR002910Floricaula/leafy protein
PfamPF016984.3E-33347409IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 433 aa     Download sequence    Send to blast
MDPDAFPASL FKWDPRGPMV APAVGPAAAA EAGSRGGGGY WGEQLGGLEE LFQAYGIRYY  60
TAAKIAELGF TASTLVNMRD EELDDMMSSL SHIFRWDLLV GERYGVKAAV RAERRRLEVD  120
LLYYDGDRRI AAADTPTNVI DAHSQEGLSE EPVQQEREMV GSGGGGGGER KKKQQRRSSK  180
GVAHMRRMLM LDPNDSSGMM MLEENDAAAE DQDEDEEEND VVNNSNNSYK GKQLGRMSSC  240
ERQREHPFIV TEPGEVARGK KNGLDYLFHL YEQCRQFLLQ VQTIAKERGE KCPTKVTNEV  300
FRFAKKAGAS HINKPKMRHY VHCYALHCLD EEGSNALRRA YKERGGRRAY KEGGENVGAG  360
RQACYNPLVA IAARQAAWDI DSIFNAHPRL SIWYVPTKLR QLCHAERNAV TTPAAAASTS  420
AAAAHHDHHH LSF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-992414084161PROTEIN LEAFY
2vy2_A1e-992414084161PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105604.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0561591e-77AB056159.1 Malus x domestica AFL2 mRNA, complete cds.
GenBankAB1620291e-77AB162029.1 Pyrus pyrifolia PpLFY-1 mRNA for LEAFY protein, complete cds.
GenBankAB1620301e-77AB162030.1 Pyrus communis PcLFY-1 mRNA for LEAFY protein, complete cds.
GenBankAB1620341e-77AB162034.1 Malus x domestica AFL2 mRNA for LEAFY protein, complete cds.
GenBankAB8538711e-77AB853871.1 Pyrus pyrifolia PpLFY1a mRNA for LEAFY protein, complete cds, cultivar: Kosui.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105604.10.0floricaula/leafy homolog
SwissprotO040641e-168FLLH_POPTR; Floricaula/leafy homolog
TrEMBLW9RZX10.0W9RZX1_9ROSA; Floricaula/leafy-like protein
STRINGXP_010105604.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.12e-98floral meristem identity control protein LEAFY (LFY)
Publications ? help Back to Top
  1. Tuskan GA, et al.
    The genome of black cottonwood, Populus trichocarpa (Torr. & Gray).
    Science, 2006. 313(5793): p. 1596-604
    [PMID:16973872]