PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010105336.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 451aa MW: 48910.7 Da PI: 8.3245 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 41.6 | 3e-13 | 76 | 132 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++n+ ++k+ g ++ +e Aa+a++ a++k++g XP_010105336.1 76 SIYRGVTRHRWTGRYEAHLWDkSTWNQnQNKKGKQGAYDDEEAAARAYDLAALKYWG 132 57*******************6666777775555599******************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 1.18E-14 | 76 | 141 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.6E-9 | 76 | 132 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.518 | 77 | 140 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.1E-12 | 77 | 141 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-17 | 77 | 146 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-5 | 78 | 89 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 5.2E-5 | 122 | 142 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MASSSSDPGL KPESNGGGGG GGGGGGGGGG ESSEAAMAND QILLYRGLKK AKKERGCTAK 60 ERISKMPPCA AGKRSSIYRG VTRHRWTGRY EAHLWDKSTW NQNQNKKGKQ GAYDDEEAAA 120 RAYDLAALKY WGPGTLINFP DVDDVVQVTD YTRDLEEMQN VSREEYLASL RRKSSGFSRG 180 ISKYRGLPSR WELSFGRMAG SEYFSGMHYG TGEDPATENE FMGSLCFERK MDLTNCIKWW 240 GPNKNRQGDA SVKSSEETKH GCAGDIGSEL KTLEWAVQPT EPYQMPRLGV SPEGKQHKGS 300 KVSALSILSR SAAYKSLQEK ASKKQESNVD NDENKNKNTI NQMDYGKAVE KSTSHDGGNE 360 RLGVGLGMTG GLSLQRNMFP LTPLLSAPLL TNYNTIDPLV DPILWTSLAP VLPSGISHPA 420 EVIAGEPPVA DVICQVMDHN LSGYGRRPAG G |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010105336.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027236.1 | 0.0 | AP2-like ethylene-responsive transcription factor At2g41710 isoform X1 | ||||
Swissprot | Q8GWK2 | 1e-162 | AP2L4_ARATH; AP2-like ethylene-responsive transcription factor At2g41710 | ||||
TrEMBL | W9RZ58 | 0.0 | W9RZ58_9ROSA; AP2-like ethylene-responsive transcription factor | ||||
STRING | XP_010105336.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6007 | 29 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41710.1 | 1e-147 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21399060 |