PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105333.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C2H2
Protein Properties Length: 423aa    MW: 48635.3 Da    PI: 6.8348
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105333.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.22.9e-05262281120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_010105333.1 262 FSCPVCYKTFNRYNNMQMHM 281
                     89*****************9 PP
2zf-C2H214.20.00013346368123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_010105333.1 346 FMCRKCGKAFAVRGDWRTHEKNC 368
                     89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.743262289IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.6E-6262281IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.45262284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280264284IPR007087Zinc finger, C2H2
SuperFamilySSF576672.35E-6328366No hitNo description
Gene3DG3DSA:3.30.160.601.2E-5342366IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549346366IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808346366IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 423 aa     Download sequence    Send to blast
MADPYSNFFT GLFKFNPFHP NNNSSPSSNP FHHHHHHHHH QTQQPPYYHH HHHHLHHDRH  60
HHQHHHNFFN NINLQSSPYY SASILGSQTA QIPPSAAAVP APPSSPPLRE ALPLLSLITS  120
PSKHEEEEEE EEDEYGDHDE INSTNTTTTT KNKKDHHHNH DLNIDQEDED DDHDDKTVTV  180
ALHIGLPSPS AEEMASLLSG KYNSSSDQMI NDNNNNHHHN NKDHDHDGDH HGDDSGYPMT  240
RLNKGQYWIP TPSQILIGPT QFSCPVCYKT FNRYNNMQMH MWGHGSQYRK GPESLRGTQP  300
TGMLRLPCYC CAPGCRNNID HPRAKPLKDF RTLQTHYKRK HGIKPFMCRK CGKAFAVRGD  360
WRTHEKNCGK LWYCICGSDF KHKRSLKDHI KAFGNGHAAY GIDGFEEEDE PASEVEQDNE  420
FMQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105333.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-146ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLW9RQZ00.0W9RQZ0_9ROSA; Protein TRANSPARENT TESTA 1
STRINGXP_010105333.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-140C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]