PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010105275.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 185aa MW: 21173.8 Da PI: 8.4365 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 39.2 | 9.2e-13 | 9 | 41 | 1 | 33 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCda 33 krien +nr +t++kRrng++K A+EL vL +a XP_010105275.1 9 KRIENITNRIITYAKRRNGLFKMAQELTVLYNA 41 79***************************9765 PP | |||||||
2 | K-box | 44.8 | 5.4e-16 | 40 | 108 | 13 | 81 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelq 81 +a+++++ l+ Lk +++Lq+++ h++Ge+L++Ls+ eL L +++e++l+ R++K ++l + e+l+ XP_010105275.1 40 NAKRMEERLKELKVTNRSLQKQISHRKGESLSNLSFDELLALDREMEDALEALRTRKLRFLEQTSEDLR 108 6799*********************************************************99999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 19.147 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.1E-10 | 1 | 54 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.44E-14 | 1 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.0E-11 | 10 | 42 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.6E-13 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.7E-10 | 41 | 109 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.153 | 41 | 126 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MARRKIQIKR IENITNRIIT YAKRRNGLFK MAQELTVLYN AKRMEERLKE LKVTNRSLQK 60 QISHRKGESL SNLSFDELLA LDREMEDALE ALRTRKLRFL EQTSEDLRSG FNGALDDPHY 120 GVVDNGGVYD YGIPRAFASG LHRNQLALDT ETKSLLTTCS DYISEFSVNQ SNLDDQTESA 180 AHTSS |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010105275.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024027188.1 | 1e-122 | floral homeotic protein DEFICIENS isoform X2 | ||||
Swissprot | E0CPH4 | 3e-30 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | W9S1N7 | 1e-133 | W9S1N7_9ROSA; Floral homeotic protein APETALA 3 | ||||
STRING | XP_010105275.1 | 1e-134 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 3e-21 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21402358 |
Publications ? help Back to Top | |||
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