PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010105274.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 228aa    MW: 25995.6 Da    PI: 9.4344
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010105274.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF89.71.5e-281059251
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                    +ien +nrqvt+skRrng+lKKA+ELSvLCda+v++ii+s tgkl+ey s
  XP_010105274.1 10 KIENPTNRQVTYSKRRNGLLKKAQELSVLCDAKVSIIILSGTGKLHEYTS 59
                    79**********************************************75 PP
2K-box83.54.7e-2871163193
           K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                     y+++sg++l+++++e++q++ + L+++++nL+ ++ +++G++L+ L++keL+ Leq++e++ k iR++K++++ +qi+++ kk k+++++n+a
  XP_010105274.1  71 YERTSGTDLWSSQYEKMQEHKRILEEKNRNLRMQISQRMGQCLDGLNFKELHDLEQEMESAAKVIRERKYKVMSNQIDTTNKKLKRAKQINNA 163
                     6788999**********************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-36160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006630.375161IPR002100Transcription factor, MADS-box
CDDcd002651.27E-37280No hitNo description
PRINTSPR004047.4E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-33393IPR002100Transcription factor, MADS-box
PfamPF003195.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.4E-273859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1682163IPR002487Transcription factor, K-box
PROSITE profilePS5129713.5684181IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MARGKILIQK IENPTNRQVT YSKRRNGLLK KAQELSVLCD AKVSIIILSG TGKLHEYTSE  60
STSTKELIDL YERTSGTDLW SSQYEKMQEH KRILEEKNRN LRMQISQRMG QCLDGLNFKE  120
LHDLEQEMES AAKVIRERKY KVMSNQIDTT NKKLKRAKQI NNAFLTDDIK DDPDYALLEG  180
AGGHYNDSIA GYPNAFPSLL ALGLQLNQPN FQPKAESSVI TTWGVPKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A9e-15159159MEF2C
5f28_B9e-15159159MEF2C
5f28_C9e-15159159MEF2C
5f28_D9e-15159159MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the genetic control of flower development. Acts in conjunction with GLOBOSA (glo).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010105274.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010105274.11e-171floral homeotic protein PMADS 1
SwissprotP237064e-77DEFA_ANTMA; Floral homeotic protein DEFICIENS
TrEMBLW9RZ141e-169W9RZ14_9ROSA; Floral homeotic protein DEFICIENS
STRINGXP_010105274.11e-170(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.12e-75MIKC_MADS family protein
Publications ? help Back to Top
  1. Schwarz-Sommer Z, et al.
    Characterization of the Antirrhinum floral homeotic MADS-box gene deficiens: evidence for DNA binding and autoregulation of its persistent expression throughout flower development.
    EMBO J., 1992. 11(1): p. 251-63
    [PMID:1346760]
  2. Sommer H, et al.
    Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors.
    EMBO J., 1990. 9(3): p. 605-13
    [PMID:1968830]
  3. Gallois JL, et al.
    Functional characterization of the plant ubiquitin regulatory X (UBX) domain-containing protein AtPUX7 in Arabidopsis thaliana.
    Gene, 2013. 526(2): p. 299-308
    [PMID:23747397]
  4. Davies B,Egea-Cortines M,de Andrade Silva E,Saedler H,Sommer H
    Multiple interactions amongst floral homeotic MADS box proteins.
    EMBO J., 1996. 15(16): p. 4330-43
    [PMID:8861961]