PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010105273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | SRS | ||||||||
Protein Properties | Length: 361aa MW: 39857.8 Da PI: 7.6866 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 224.6 | 1.9e-69 | 126 | 283 | 3 | 153 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.......aeaaskrkrel.kskkqsalsst 89 sg+++CqdCGnqakkdC h RCRtCCksrgf+C+thvkstWvpaakrrerqqqla++++ +++++ + ++skr+re+ + +++ a ++t XP_010105273.1 126 SGGMNCQDCGNQAKKDCPHLRCRTCCKSRGFQCQTHVKSTWVPAAKRRERQQQLASLQALQNQQQeqtnqqfRVDNSKRQRENhRGSASLACTTT 220 7899**************************************************99987776666566777767777777776233344455555 PP DUF702 90 klssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 +l++++s el + +P+ev+s+avfrcvrvs++dd++e++aYqtav+igGhvf+GiLydqGl+ XP_010105273.1 221 RLPTNTSGLELGGA-FPAEVNSSAVFRCVRVSAMDDADEHYAYQTAVNIGGHVFRGILYDQGLD 283 66666666555554.***********************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 6.2E-67 | 128 | 283 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.4E-26 | 130 | 172 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 4.1E-27 | 234 | 282 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0048467 | Biological Process | gynoecium development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 361 aa Download sequence Send to blast |
MAGFFCLGGR DHRHHHQTTT PSKQEEEDQR DQQQNLFLYR SNDEEIPNNG FEIWPQYHQQ 60 QQQQQQGLSN YISFGLTGSS STSTPPSASH SRRNSFNIND VVVSSDDFRP RLGFTVNMMR 120 QGGLGSGGMN CQDCGNQAKK DCPHLRCRTC CKSRGFQCQT HVKSTWVPAA KRRERQQQLA 180 SLQALQNQQQ EQTNQQFRVD NSKRQRENHR GSASLACTTT RLPTNTSGLE LGGAFPAEVN 240 SSAVFRCVRV SAMDDADEHY AYQTAVNIGG HVFRGILYDQ GLDGHFTSAG TGEGSSARCE 300 DDGTQQLNLI CAATNTTTAA TTTAGTNNPS SSMSLLDRSL VYPTPINAFM AGTQFFPPPR 360 S |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:16740146}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010105273.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010105273.1 | 0.0 | protein SHI RELATED SEQUENCE 5 | ||||
Swissprot | Q9LQZ5 | 3e-85 | SRS5_ARATH; Protein SHI RELATED SEQUENCE 5 | ||||
TrEMBL | W9SFH8 | 0.0 | W9SFH8_9ROSA; Uncharacterized protein | ||||
STRING | XP_010105273.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF882 | 34 | 125 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G75520.1 | 1e-72 | SHI-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21402356 |
Publications ? help Back to Top | |||
---|---|---|---|
|