PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010105118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | bHLH | ||||||||
Protein Properties | Length: 367aa MW: 41046.2 Da PI: 4.6468 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 36.4 | 9.3e-12 | 198 | 241 | 6 | 54 |
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL +++Y+k+L XP_010105118.1 198 LMAERRRRRRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYMKEL 241 589*********************66......****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.548 | 192 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 3.53E-15 | 195 | 256 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 3.0E-12 | 198 | 247 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.5E-9 | 198 | 241 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 5.17E-5 | 199 | 246 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 8.2E-15 | 199 | 253 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd04873 | 0.00978 | 293 | 334 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MELSQHGFLE ELLAPTRRDS WSTFSSSMLN DQFFASGNWN FDSFEDNNNP VLAIPNPPPT 60 TFLTNSDCPF TDQSSSFPFV DHDHGVVLSV PADDNFDSSY SKNNKPPPFP SQDQDYPSMA 120 EDHEVQFGFL GGENGLELDE ISNNKLAASC CKVEMDQHIM TCATELIPGF NMGSVAANCG 180 EKKISRPKKL EGQPSKNLMA ERRRRRRLND RLSMLRSIVP KISKMDRTSI LGDTIDYMKE 240 LLERISKLQE EEGMEEFTNG QINLLGISKE LKPNVVLVRN SPKFDVERRE VDTRIDICCA 300 AKPGLLLSTV NTLEALGLEI QQCVISCFND FSMQASCSEG AQQRTLISSE DIKQAIFRNA 360 GYGGRCL |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 200 | 207 | ERRRRRRL |
2 | 201 | 206 | RRRRRR |
3 | 204 | 211 | RRRLNDRL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269|PubMed:17088607}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010105118.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010105118.1 | 0.0 | transcription factor bHLH93 | ||||
Swissprot | Q9LSL1 | 2e-87 | BH093_ARATH; Transcription factor bHLH93 | ||||
TrEMBL | W9RQR3 | 0.0 | W9RQR3_9ROSA; Uncharacterized protein | ||||
STRING | XP_010105118.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1186 | 34 | 103 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G65640.1 | 1e-81 | beta HLH protein 93 |
Link Out ? help Back to Top | |
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Entrez Gene | 21399177 |
Publications ? help Back to Top | |||
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