PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104995.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ERF | ||||||||
Protein Properties | Length: 333aa MW: 37078.1 Da PI: 5.3094 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.9 | 2.8e-19 | 122 | 172 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ++++GVr+++ +g+W+AeIrdp r r +lg+++taeeAa +++a+ +l+g XP_010104995.1 122 KKFRGVRQRP-WGKWAAEIRDPL----RrVRLWLGTYDTAEEAAMVYDNAAIQLRG 172 59********.**********72....45*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.69E-31 | 122 | 180 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 5.3E-30 | 123 | 180 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 23.657 | 123 | 180 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.7E-21 | 123 | 180 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.0E-12 | 123 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-38 | 123 | 186 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 124 | 135 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.5E-10 | 146 | 162 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0042991 | Biological Process | transcription factor import into nucleus | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048825 | Biological Process | cotyledon development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0042802 | Molecular Function | identical protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 333 aa Download sequence Send to blast |
MNRSGQVVKY TEHCNHTKLT EKFSKSTASP EMAARPRIVR ISVTDGDATD SSSDEEGEFC 60 YSRHRVKRFV NEITIESCSR ESNVVCRSTR KKRRSTSSGR KARMIPAAAA GHRSVMKTPA 120 GKKFRGVRQR PWGKWAAEIR DPLRRVRLWL GTYDTAEEAA MVYDNAAIQL RGPDALTNFA 180 TPPAPEAKQA AMSCGYYSGE ESHNNNGDNN NLILCSPTSV LRCPSPSNEE ADSKGLIIRD 240 IGDLRDESCV SENFSEFSSE HSSFETFIPD DIFDFQSSIP DFFDKTGALE GDLNDIFAAD 300 PSWDFGFGSR TFQPDDYFQD IGDIFSSDPL VAL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 9e-20 | 121 | 179 | 3 | 62 | ATERF1 |
3gcc_A | 9e-20 | 121 | 179 | 3 | 62 | ATERF1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00027 | PBM | Transfer from AT4G23750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010104995.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010104995.1 | 0.0 | ethylene-responsive transcription factor CRF2 | ||||
TrEMBL | W9RY92 | 0.0 | W9RY92_9ROSA; Ethylene-responsive transcription factor CRF2 | ||||
STRING | XP_010104995.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF450 | 34 | 161 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G23750.2 | 3e-61 | cytokinin response factor 2 |
Link Out ? help Back to Top | |
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Entrez Gene | 21395310 |