PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010104961.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

G2-like

Protein Properties

Length: 444aa MW: 48509.8 Da PI: 7.0391

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010104961.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106.9	1.1e-33	38	92	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprl+Wtp+LHe+Fveav+qLGG++kAtPkt+++lm+++gLtl+h+kSHLQkYRl XP_010104961.1 38 KPRLKWTPDLHEHFVEAVNQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRL 92 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.56	35	95	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.7E-31	36	93	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.13E-16	37	93	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.4E-22	38	93	IPR006447	Myb domain, plants
Pfam	PF00249	3.7E-9	40	91	IPR001005	SANT/Myb domain
Pfam	PF14379	3.5E-24	139	186	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 444 aa Download sequence Send to blast
MQLSSSRMAT SIPPERHLFL QGGNGPRDSG LVLSTDAKPR LKWTPDLHEH FVEAVNQLGG 60 ADKATPKTVM KLMGIPGLTL YHLKSHLQKY RLSKNLHGQA NSGTTKIGTV GGVAADRISE 120 ASANQLNNLS IGPQANKGFH ISETLQMQIE VQRRLHEQLE VQRHLQLRME AQGKYLQAVL 180 EKAQETLGRQ NLGAVGLEAA KVQLSELVSK VSTQCLNSAF AELKEVQGGL CRQPNSSNQT 240 QGTVLIRQQQ PNNDCSMDSC LTSCEGSQKD QEIAHNTSSG IVQLRPYNNA ATTSTSNAFL 300 EPKWCNDAKD SVMFLSETRM FPVERSSNTG GLSIGIGLGG GEKGGDTSTY SQGVRFRGTG 360 SSWDVDEDFV DRNTTTASAR SAGFHDKASD HQACRVANYF ATNKVLDLNS HDHDHHDHDH 420 ENQNENHSSS TCYKQIDLNG FGWS

Sequence ? help Back to Top

Protein Sequence Length: 444 aa Download sequence Send to blast

MQLSSSRMAT SIPPERHLFL QGGNGPRDSG LVLSTDAKPR LKWTPDLHEH FVEAVNQLGG  60
ADKATPKTVM KLMGIPGLTL YHLKSHLQKY RLSKNLHGQA NSGTTKIGTV GGVAADRISE  120
ASANQLNNLS IGPQANKGFH ISETLQMQIE VQRRLHEQLE VQRHLQLRME AQGKYLQAVL  180
EKAQETLGRQ NLGAVGLEAA KVQLSELVSK VSTQCLNSAF AELKEVQGGL CRQPNSSNQT  240
QGTVLIRQQQ PNNDCSMDSC LTSCEGSQKD QEIAHNTSSG IVQLRPYNNA ATTSTSNAFL  300
EPKWCNDAKD SVMFLSETRM FPVERSSNTG GLSIGIGLGG GEKGGDTSTY SQGVRFRGTG  360
SSWDVDEDFV DRNTTTASAR SAGFHDKASD HQACRVANYF ATNKVLDLNS HDHDHHDHDH  420
ENQNENHSSS TCYKQIDLNG FGWS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-21	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-21	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-21	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-21	38	94	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator that may activate the transcription of specific genes involved in nitrogen uptake or assimilation (PubMed:15592750). Acts redundantly with MYR1 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269\|PubMed:21255164, ECO:0000305\|PubMed:15592750}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00331	DAP	Transfer from AT3G04030	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010104961.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by nitrogen deficiency. {ECO:0000269\|PubMed:15592750}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010104961.1	0.0	myb-related protein 2 isoform X1
Swissprot	Q9SQQ9	1e-123	PHL9_ARATH; Myb-related protein 2
TrEMBL	W9S0Q1	0.0	W9S0Q1_9ROSA; Myb family transcription factor APL
STRING	XP_010104961.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3852	31	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04030.3	1e-121	G2-like family protein

Link Out ? help Back to Top
Entrez Gene	21385892

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Nakano Y,Naito Y,Nakano T,Ohtsuki N,Suzuki K NSR1/MYR2 is a negative regulator of ASN1 expression and its possible involvement in regulation of nitrogen reutilization in Arabidopsis. Plant Sci., 2017. 263: p. 219-225 [PMID:28818378]