PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104899.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family B3
Protein Properties Length: 439aa    MW: 47751.8 Da    PI: 7.4804
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104899.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.78.6e-3291195199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++ +e++  l +ed++g+ W+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_010104899.1  91 FDKVVTPSDVGKLNRLVIPKQHAEKYfpldSSTNEKGLLLNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDVVSFQRGvGElGK 185
                     89***************************966778999*************************************************66699999 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                      +l++ ++r+
  XP_010104899.1 186 DRLFIDWRRR 195
                     9999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.106.3E-4283198IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-2988195IPR015300DNA-binding pseudobarrel domain
CDDcd100171.85E-2689178No hitNo description
PROSITE profilePS5086314.69291196IPR003340B3 DNA binding domain
PfamPF023622.9E-2991195IPR003340B3 DNA binding domain
SMARTSM010199.5E-2391196IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDFGSSRDGV FSEDIEHINN NNNIKNRINI HPFSYSNSSL STLSGSTTTG PGPDTKLELM  60
NSSSPQNDDA SAAATATAEE NYQSIEREHM FDKVVTPSDV GKLNRLVIPK QHAEKYFPLD  120
SSTNEKGLLL NFEDRNGKPW RFRYSYWNSS QSYVMTKGWS RFVKEKKLDA GDVVSFQRGV  180
GELGKDRLFI DWRRRPDAPE NHHHHLGGMA SLHHHLPAAA AFSFPSVPWS HSLMRPPPPF  240
QSPRDVSSGG GAGQLQFSPG MVNYGAISLH HHHHPYRNSY GGGGGNSYGF GGRVPSVCSA  300
GPVFYLRSSA APQEEQQAAG VVVQRGGGGG GVEQMVFDSV PVVHAKAAAA GKRLRLFGVN  360
VECPAESESE ESSTYDTHHH TMAVSPHHLH LSSTSSSPSP NSQSPLGQLR LYNGTPIPGI  420
STVDYLNKGK ASMTSNFDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-66861963114B3 domain-containing transcription factor NGA1
5os9_B1e-66861963114B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104899.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6066882e-72AL606688.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0064M23, complete sequence.
GenBankAL6629872e-72AL662987.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0088A01, complete sequence.
GenBankAP0149602e-72AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-72CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCR8552332e-72CR855233.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0303A11-B0406H05, complete sequence.
GenBankHM4501522e-72HM450152.1 Oryza sativa Japonica Group RAV-like 1 protein (RAVL1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104899.10.0B3 domain-containing transcription factor NGA1
TrEMBLW9S0I80.0W9S0I8_9ROSA; B3 domain-containing transcription factor NGA1
STRINGXP_010104899.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23383382
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.12e-68B3 family protein