PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104483.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ZF-HD
Protein Properties Length: 302aa    MW: 33233.9 Da    PI: 8.3399
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104483.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer96.22.6e-3054113257
     ZF-HD_dimer   2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegt....aaalkCaACgCHRnFHRrev 57 
                     + v+YkeC++NhAas+Ggha DGCgEfmps+ e  +    +++l+CaACgCHRnFHRre 
  XP_010104483.1  54 NDVKYKECMRNHAASIGGHANDGCGEFMPSSAEAEKsdmsPSSLTCAACGCHRNFHRREI 113
                     679**************************9655422346699****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047704.4E-2856113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257744.0E-1756112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.1E-2857113IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.24158112IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-28211280IPR009057Homeodomain-like
SuperFamilySSF466894.74E-18211280IPR009057Homeodomain-like
TIGRFAMsTIGR015654.5E-26220276IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MDLSVVPYKH HHNSANNKAD NESEDGDVVE PKNNAANNNN NNLNNKNILN SNCNDVKYKE  60
CMRNHAASIG GHANDGCGEF MPSSAEAEKS DMSPSSLTCA ACGCHRNFHR REIIGCEQNL  120
LYPVHSPPPQ PVLLYNAVGP ATPRWDPKMS VVGPPRRHQI HSLHRNGSGG GGRGIVEARE  180
GRAECGAEVR EYYDRRSSET PEREDVSAPS AMAGSGGGGK RFRTKFTLEQ KDRMLAFADR  240
IGWRIQRQDD VAINQFCSEI GVKRNVLKVW MHNNKNAHRR RESAPPSLAE APTPPTPQAV  300
GV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-272202771875ZF-HD homeobox family protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104483.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010104483.10.0zinc-finger homeodomain protein 2
TrEMBLW9RNK70.0W9RNK7_9ROSA; Uncharacterized protein
STRINGXP_010104483.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF150921014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14440.21e-48homeobox protein 31