PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104333.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family LSD
Protein Properties Length: 133aa    MW: 13978.3 Da    PI: 7.6994
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104333.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD142.51.1e-131640125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    C+gCr+lL YP GA+sV+Ca+C++V
  XP_010104333.1 16 CSGCRNLLLYPVGATSVCCAVCNAV 40
                    ************************9 PP

2zf-LSD1474.2e-155579125
         zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                    CggC+tlL+Y rGA+sV+C++C+tV
  XP_010104333.1 55 CGGCHTLLMYIRGATSVQCSCCHTV 79
                    ************************9 PP

3zf-LSD142.11.5e-1393117125
         zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                     Cg+Cr lL+Y +GA+sV+Ca+C++V
  XP_010104333.1  93 CGNCRMLLMYQYGARSVKCAVCNFV 117
                     ***********************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010538.5E-131343IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-101640IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.5E-155281IPR005735Zinc finger, LSD1-type
PfamPF069431.1E-125579IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.4E-1290120IPR005735Zinc finger, LSD1-type
PfamPF069438.9E-1393117IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009814Biological Processdefense response, incompatible interaction
GO:0034051Biological Processnegative regulation of plant-type hypersensitive response
GO:0034052Biological Processpositive regulation of plant-type hypersensitive response
GO:0045595Biological Processregulation of cell differentiation
GO:2000121Biological Processregulation of removal of superoxide radicals
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
MELSDCKLGA QSQLVCSGCR NLLLYPVGAT SVCCAVCNAV TAVPPPGTEM AQLVCGGCHT  60
LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL MYQYGARSVK CAVCNFVTSV  120
GVPTSTTEQK FST
Functional Description ? help Back to Top
Source Description
UniProtPositive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104333.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026513.11e-85protein LOL1 isoform X1
RefseqXP_024026514.11e-85protein LOL1 isoform X1
SwissprotQ93ZB19e-79LOL1_ARATH; Protein LOL1
TrEMBLW9RYZ58e-91W9RYZ5_9ROSA; Uncharacterized protein
STRINGXP_010104333.11e-91(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF81873346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.34e-67lsd one like 1
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]