PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010104333.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | LSD | ||||||||
Protein Properties | Length: 133aa MW: 13978.3 Da PI: 7.6994 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 42.5 | 1.1e-13 | 16 | 40 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V XP_010104333.1 16 CSGCRNLLLYPVGATSVCCAVCNAV 40 ************************9 PP | |||||||
2 | zf-LSD1 | 47 | 4.2e-15 | 55 | 79 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggC+tlL+Y rGA+sV+C++C+tV XP_010104333.1 55 CGGCHTLLMYIRGATSVQCSCCHTV 79 ************************9 PP | |||||||
3 | zf-LSD1 | 42.1 | 1.5e-13 | 93 | 117 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V XP_010104333.1 93 CGNCRMLLMYQYGARSVKCAVCNFV 117 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 8.5E-13 | 13 | 43 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.2E-10 | 16 | 40 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 7.5E-15 | 52 | 81 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-12 | 55 | 79 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.4E-12 | 90 | 120 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 8.9E-13 | 93 | 117 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009814 | Biological Process | defense response, incompatible interaction | ||||
GO:0034051 | Biological Process | negative regulation of plant-type hypersensitive response | ||||
GO:0034052 | Biological Process | positive regulation of plant-type hypersensitive response | ||||
GO:0045595 | Biological Process | regulation of cell differentiation | ||||
GO:2000121 | Biological Process | regulation of removal of superoxide radicals |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MELSDCKLGA QSQLVCSGCR NLLLYPVGAT SVCCAVCNAV TAVPPPGTEM AQLVCGGCHT 60 LLMYIRGATS VQCSCCHTVN LALEANQVAH VNCGNCRMLL MYQYGARSVK CAVCNFVTSV 120 GVPTSTTEQK FST |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269|PubMed:12732715}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010104333.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024026513.1 | 1e-85 | protein LOL1 isoform X1 | ||||
Refseq | XP_024026514.1 | 1e-85 | protein LOL1 isoform X1 | ||||
Swissprot | Q93ZB1 | 9e-79 | LOL1_ARATH; Protein LOL1 | ||||
TrEMBL | W9RYZ5 | 8e-91 | W9RYZ5_9ROSA; Uncharacterized protein | ||||
STRING | XP_010104333.1 | 1e-91 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8187 | 33 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32540.3 | 4e-67 | lsd one like 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 21406053 |
Publications ? help Back to Top | |||
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