PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010104267.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARF
Protein Properties Length: 612aa    MW: 68022.9 Da    PI: 6.6768
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010104267.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B364.12.2e-20121222199
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--S.EEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesk.tltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.se 89 
                     f k+lt+sd+++ g +++p+ +ae++    +++ + ++  +  +d +g+s+++++iyr++++r++lt+GW++Fv+ ++L +gD+vvF    r ++
  XP_010104267.1 121 FTKTLTQSDSNNGGGFSVPRYCAETIfpplDYSAPMPFqFMNPKDVHGKSYTFRHIYRGTPRRHLLTTGWSDFVNHKKLVAGDSVVFV---RlES 212
                     89**************************87433332220344556777****************************************...5588 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +  +++++r+
  XP_010104267.1 213 GDIFIGIRRA 222
                     8889999986 PP
2Auxin_resp101.31.3e-33272355183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                     aa+ a+++++Fev Y+Prast+eF+v+++ v++a++++++ GmR+km +etedss++++ +Gt+++v  +dp +Wp+S+W +L+
  XP_010104267.1 272 AANLAASGQPFEVEYYPRASTPEFCVRASAVRAAMQIRWCSGMRLKMPIETEDSSRISWfMGTISSVDVADPANWPDSPWGLLQ 355
                     7899****************************************************************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.8E-33115226IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.7E-27117225IPR015300DNA-binding pseudobarrel domain
CDDcd100171.39E-19120221No hitNo description
SMARTSM010192.3E-19121223IPR003340B3 DNA binding domain
PfamPF023621.9E-18121222IPR003340B3 DNA binding domain
PROSITE profilePS5086311.364121223IPR003340B3 DNA binding domain
PfamPF065074.8E-29272355IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 612 aa     Download sequence    Send to blast
MITVMESGTE PMKKTGEKCL DPQLWHAIAG GLVQIPPINS KVFYFPQGHA EHAKGDVDFG  60
NTRIPAFILC KVSAIRYMAD TEDEVFAKIR LVPLKSDDLD VDDDGYVLNN GTENAEKMTS  120
FTKTLTQSDS NNGGGFSVPR YCAETIFPPL DYSAPMPFQF MNPKDVHGKS YTFRHIYRGT  180
PRRHLLTTGW SDFVNHKKLV AGDSVVFVRL ESGDIFIGIR RAKKCIGGAH EFPGRWNQQR  240
GNYGSSQFWG VMGRISNKDS RGKVRAESVV EAANLAASGQ PFEVEYYPRA STPEFCVRAS  300
AVRAAMQIRW CSGMRLKMPI ETEDSSRISW FMGTISSVDV ADPANWPDSP WGLLQVEWDE  360
PDLLQNVKRV NPWLGELVTS MPPIPVSPFS PPRKKLRLPQ NPDLSLLSQL PMPLLASNFL  420
NSSVPFHYIQ DNISAGIQGA RHSRLGPYPA DLHLNELQSS LFPMGFQQHY PISPPTNPGG  480
NLNYTENNEN FSHWLKMEHR VQNLKAKDET KPPQLILFGQ VILTEEQLSK SSVENCTSNG  540
NLEKTANPSD GSGSTVLQNG SRENSTDGVY KDHQSDLGLE IGPCKVFLKS ADVGRTLDLS  600
NPSELAFLSG NW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-691537346385Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010104267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024026453.10.0auxin response factor 18
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLW9SMD30.0W9SMD3_9ROSA; Auxin response factor
STRINGXP_010104267.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]