PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010103400.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ARR-B
Protein Properties Length: 538aa    MW: 59882.1 Da    PI: 4.8824
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010103400.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like68.61e-21197254156
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmk...vkgLtlehvkSHLQkYRla 56 
                     kprl+Wt eLH++F  av+qL  +++A+Pk+ile+m+   v  Lt+e+v+SHLQkYR++
  XP_010103400.1 197 KPRLVWTAELHNKFDMAVKQL-LPKNAVPKKILECMQnmgVTNLTRENVASHLQKYRIH 254
                     79*******************.9*********8876422278899************86 PP
2Response_reg40.71.3e-14291401111
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+ + ++  ++ l+++l++ gy  v  ++++++al ll  +++++D+i+ D  +p+mdGl+ll e    e+ lp++++  +++ + +l  l  G
  XP_010103400.1  29 VLVLEHDDRYLSTLETVLKSRGY-GVIKCQQAKAALSLLveDKSRYDVIISDAHLPDMDGLKLLLEKVGLEMGLPVVLILPEKKRDSILMGLLNG 122
                     789999999**************.9999***********555555******************99999999************************ PP

                     ESEEEESS--HHHHHHHH CS
    Response_reg  94 akdflsKpfdpeelvkav 111
                       ++l Kp+  e l +++
  XP_010103400.1 123 DCGYLIKPITSESLGQML 140
                     *********999987765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.40.50.23009.8E-1927143No hitNo description
SMARTSM004482.7E-527140IPR001789Signal transduction response regulator, receiver domain
SuperFamilySSF521721.99E-1827143IPR011006CheY-like superfamily
PROSITE profilePS5011026.70228144IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.0E-1129140IPR001789Signal transduction response regulator, receiver domain
CDDcd001566.08E-1230143No hitNo description
Gene3DG3DSA:1.10.10.604.5E-23194257IPR009057Homeodomain-like
SuperFamilySSF466892.69E-15195257IPR009057Homeodomain-like
TIGRFAMsTIGR015573.5E-19197254IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 538 aa     Download sequence    Send to blast
MEDNSKGKSI AVPEIRNFTS DKLPLEVRVL VLEHDDRYLS TLETVLKSRG YGVIKCQQAK  60
AALSLLVEDK SRYDVIISDA HLPDMDGLKL LLEKVGLEMG LPVVLILPEK KRDSILMGLL  120
NGDCGYLIKP ITSESLGQML EQMSINKENG VRVLVVGDAE SQEITDTIPP RDHELQENFP  180
ATSNEADASY DVTKAKKPRL VWTAELHNKF DMAVKQLLPK NAVPKKILEC MQNMGVTNLT  240
RENVASHLQK YRIHRKRDHE GRRKALDDLQ RTSVEQSHAS DGMFESIQSY TGPDQLPFPS  300
LALDSNSNHD APDLPNHASI NPLDSSVQAM VSSHKKLMAN QLSDHNDGTV LVYNNWTVPA  360
MQPNLQTNET PAQYFGINTN ITDRQYCQSS EAGPSGQIMI DGAENIGNWS FDFSECENIN  420
VADTVNCSIE NNAAVLEYLR MSRQYNGIPD LQSTSSDRMN SNGTIYGNNN SFVAGPVAGE  480
EYYVNYGINA PYCTDIHVDG NAYNSYQNLV QPEQRYDGND FMQKPFIQQS GSGLAKTK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A5e-16193257162ARR10-B
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010103400.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLW9RKK40.0W9RKK4_9ROSA; Two-component response regulator
STRINGXP_010103400.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16110.12e-40response regulator 2