PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010103380.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | TCP | ||||||||
Protein Properties | Length: 235aa MW: 25949.6 Da PI: 4.5264 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 67.2 | 5.8e-21 | 1 | 105 | 22 | 98 |
TCP 22 vRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...............ssssaseceaesssssasnsssg............. 88 +Rls+++a++fFdLq+ LGf ++skt+eWLl++a +ik+l ++ +s+++++ce g XP_010103380.1 1 MRLSIDVAREFFDLQELLGFERASKTVEWLLRKARSEIKKLKDSnneggcsstcpemqtPSPNSESCE-------------Gasgldevginged 82 8*******************************************777766655555543333333332.............02222233333333 PP TCP 89 ................kaaksaaksk 98 + s+++++ XP_010103380.1 83 qgvagtssskplinqpA---SNKSEE 105 44444444444443221...111111 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.7E-20 | 1 | 112 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 22.627 | 1 | 41 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MRLSIDVARE FFDLQELLGF ERASKTVEWL LRKARSEIKK LKDSNNEGGC SSTCPEMQTP 60 SPNSESCEGA SGLDEVGING EDQGVAGTSS SKPLINQPAS NKSEEKQQTG DQLPNQNMMD 120 IDMNNNIVIP NSSLGAVMQV SRYDQRYEFS QEILPISNPN GWNIFQVSNH DHIRQTSTTS 180 TGTTAPIVDY ETYSYLVNHL EKWNNSLVAN SVSNVGTTSG ATGFRVPQQG DYRVF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010103380.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024028427.1 | 6e-94 | transcription factor TCP10 | ||||
TrEMBL | W9RL10 | 1e-175 | W9RL10_9ROSA; Uncharacterized protein | ||||
STRING | XP_010103380.1 | 1e-176 | (Morus notabilis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 1e-15 | TCP family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21386854 |