PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010103375.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | ARR-B | ||||||||
Protein Properties | Length: 691aa MW: 75064.2 Da PI: 6.369 | ||||||||
Description | ARR-B family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 87.7 | 1.1e-27 | 212 | 265 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kpr++W+peLH++Fv av+qL G +kA Pk+il+lm+v+gLt+e+v+SHLQk+R XP_010103375.1 212 KPRVVWSPELHKKFVAAVHQL-GVDKAFPKKILDLMNVEGLTRENVASHLQKFRG 265 79*******************.********************************5 PP | |||||||
2 | Response_reg | 81.1 | 3.5e-27 | 26 | 134 | 1 | 109 |
EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS Response_reg 1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 vl vdD+p+ +++l+++l+k +y +v+++ ++ +al++l e++ +Dl++ D++mp+mdG++ll+ +++lp+i+++ah++ +++ + + G XP_010103375.1 26 VLAVDDDPICLKVLENLLRKCQY-QVTTTNQAVKALKMLVENRnkFDLVISDVNMPDMDGFKLLELVG-LDMELPVIMLSAHSDTKLVMKGVTHG 118 799********************.***************555557*******************8764.4669********************** PP ESEEEESS--HHHHHH CS Response_reg 94 akdflsKpfdpeelvk 109 a d+l Kp+ +eel + XP_010103375.1 119 ACDYLLKPVRIEELKN 134 *************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF036392 | 1.8E-154 | 1 | 661 | IPR017053 | Response regulator B-type, plant |
SuperFamily | SSF52172 | 3.98E-36 | 23 | 147 | IPR011006 | CheY-like superfamily |
Gene3D | G3DSA:3.40.50.2300 | 2.0E-42 | 23 | 174 | No hit | No description |
SMART | SM00448 | 2.3E-33 | 24 | 136 | IPR001789 | Signal transduction response regulator, receiver domain |
PROSITE profile | PS50110 | 44.021 | 25 | 140 | IPR001789 | Signal transduction response regulator, receiver domain |
Pfam | PF00072 | 5.2E-25 | 26 | 134 | IPR001789 | Signal transduction response regulator, receiver domain |
CDD | cd00156 | 1.62E-29 | 27 | 140 | No hit | No description |
SuperFamily | SSF46689 | 3.4E-19 | 209 | 269 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 13.101 | 209 | 268 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.2E-28 | 210 | 269 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.5E-23 | 212 | 264 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.2E-8 | 214 | 263 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000160 | Biological Process | phosphorelay signal transduction system | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 691 aa Download sequence Send to blast |
MTVEDQRGSD GGKYVSLDRF PVGMRVLAVD DDPICLKVLE NLLRKCQYQV TTTNQAVKAL 60 KMLVENRNKF DLVISDVNMP DMDGFKLLEL VGLDMELPVI MLSAHSDTKL VMKGVTHGAC 120 DYLLKPVRIE ELKNIWQHVI RRRKLDTKDQ SKSPNHDKAC RENGEGGKGV AATGNEDQNV 180 KFNRKRKDQN KDEEEEGEEK GRENEDPSTQ KKPRVVWSPE LHKKFVAAVH QLGVDKAFPK 240 KILDLMNVEG LTRENVASHL QKFRGYLKKA SMVPAIGGKD TSYMRTGALE GFGDLHSLAG 300 SVRLANTALS SSLTHGRMLR RLNSPAGLTL TGSTSTGLIQ LSNPQNLSNS VKNLLQQTKC 360 PNHLVDISAL NNPTGFTVSS GLQDARAAVA SSSTAPNYSS NTLMLPGIAQ QTHSGGALGN 420 QSSVRVAASD PKAFDLEIND SSNFLDHNHC NESWQGAVQA SKFPSTAFPM SGPSNQGQMR 480 CNNLVISSTT SQIGKNPHNF SSASSLPTPL GDSRGDIEGQ DGFIGNIVHT ANFTARQRWE 540 EHGKDNQGLN QNSNAINSFV SANAINSLNQ SLDQNNAGCS QSFNASILDE LNGGTLSVFQ 600 PSEIGESAAD TKTEPSGNYL FEQAKAPDAL QDSYGLIDDI ICAMMKQCVH CVYIVTALPC 660 VIQGQNETTL MDGEFGLDTC SLGSWMQDFT A |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1irz_A | 1e-24 | 208 | 271 | 1 | 64 | ARR10-B |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010103375.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024025851.1 | 0.0 | LOW QUALITY PROTEIN: two-component response regulator ORR23 | ||||
TrEMBL | W9RL08 | 0.0 | W9RL08_9ROSA; Two-component response regulator | ||||
STRING | XP_010103375.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF956 | 34 | 112 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G25180.1 | 1e-112 | response regulator 12 |
Link Out ? help Back to Top | |
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Entrez Gene | 21399912 |