PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010103069.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | NAC | ||||||||
Protein Properties | Length: 602aa MW: 66687.9 Da PI: 4.7408 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.1 | 2.5e-51 | 15 | 141 | 1 | 127 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp GfrF+Ptdeelv++yL+ k++g+ + +vi+e+d++k+ePwdLp +++ +++ ew+fF+++d+ky++g+r nratk+gyWkatg+d++++ XP_010103069.1 15 LPLGFRFRPTDEELVDYYLRLKINGEVQLV-SVIREIDVCKLEPWDLPdlSMIPTRDPEWFFFCPQDRKYPNGHRLNRATKAGYWKATGRDRKIK 108 699*********************998655.99**************96447778999************************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 s ++ ++g+kktLvfy+grapkg++t+Wvmheyr XP_010103069.1 109 S-GTLQIGMKKTLVFYTGRAPKGKRTNWVMHEYR 141 *.999****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-59 | 6 | 165 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.128 | 15 | 165 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-27 | 16 | 141 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0016021 | Cellular Component | integral component of membrane | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 602 aa Download sequence Send to blast |
MAVGEMAVLS SLNSLPLGFR FRPTDEELVD YYLRLKINGE VQLVSVIREI DVCKLEPWDL 60 PDLSMIPTRD PEWFFFCPQD RKYPNGHRLN RATKAGYWKA TGRDRKIKSG TLQIGMKKTL 120 VFYTGRAPKG KRTNWVMHEY RPTLQELDGT NPGQSPFVLC RLFKKHDESI EGVNCEAAET 180 TVSSPITKSS PVDTQSEQEV TLGPLASGKQ PEMLPTKIEY SMIETFDDMT SEAGGAIAFP 240 SNSYSAYDAG DQGIEETASE SDQELEEDLK IFYAPTPGPL DCKIFSPLHS QMQAELGSSC 300 MYYPVANDCS TGHSGVQFQY GTNESDDVTQ FLKSVLNNSG EDATEDFVTE NNQVVESTTM 360 TNAASGFNGV LYGDGQAQLE KLEAGLQGAM SFVGTFPGEA SIYTENPEDH STGYLAHAEP 420 YSRNVLPFGS AVSINDLNPI LNEDSGPVII RRTRQLQNPP SSIETEAPHV TMIQGAAPRR 480 LRLQKKLQIS CSFKSVGRQN NKPEEESKPV VKEEEKAVEQ HATGSVDEPQ KTPFSGPVDD 540 GKTCQEPGTT MRSYSISKTG KKKVISVFSE TGSTWLFSFM FRVVVFAVLF ISFTSMWRCL 600 NF |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 3e-45 | 14 | 168 | 14 | 171 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010103069.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010103069.1 | 0.0 | protein NTM1-like 9 | ||||
TrEMBL | W9RKC5 | 0.0 | W9RKC5_9ROSA; NAC domain-containing protein 78 | ||||
STRING | XP_010103069.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5551 | 33 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 1e-100 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Entrez Gene | 21386173 |