PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102982.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CO-like
Protein Properties Length: 368aa    MW: 39510.1 Da    PI: 6.3869
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102982.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.42.2e-06949438
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                    + C+ ++   +  fC+ ++ +lC +C  ++H        H+
  XP_010102982.1  9 KACDSCKAAVAAVFCRADRAFLCLSCDAKIHCAnrlasrHE 49
                    67****************************95445666676 PP
2zf-B_box26.51.3e-085196342
        zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                     ++C+ +e+ ++   C+ +   lC +C   +H+       H++vp+
  XP_010102982.1 51 VWMCEVCEQAPAAVTCKADAAALCVSCDADIHSAnplaqrHDRVPI 96
                    689*****************************66899999*99997 PP
3CCT69.77.3e-24291334144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eKrk+RkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_010102982.1 291 REARVLRYREKRKNRKFEKTIRYASRKAYAETRPRIKGRFAKRT 334
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003361.4E-11653IPR000315B-box-type zinc finger
PROSITE profilePS5011910.281653IPR000315B-box-type zinc finger
CDDcd000216.96E-91153No hitNo description
PROSITE profilePS5011910.7794996IPR000315B-box-type zinc finger
PfamPF006431.1E-65196IPR000315B-box-type zinc finger
CDDcd000214.39E-95296No hitNo description
SMARTSM003363.1E-95496IPR000315B-box-type zinc finger
PROSITE profilePS5101716.787291333IPR010402CCT domain
PfamPF062035.6E-18291333IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGWSGAAAKA CDSCKAAVAA VFCRADRAFL CLSCDAKIHC ANRLASRHER VWMCEVCEQA  60
PAAVTCKADA AALCVSCDAD IHSANPLAQR HDRVPIEPFF DSADSIVRSS AALNFFSGPG  120
ACDNNHNDDG SGGGANRNLE TSSWILSNNK LIDGPDVKSA GEIFFSEMDS FLDVLDYSGN  180
PIHTSSGTDS VVPVKIKPVS PSPMINQSEN CFDIDFCRSK LSSFTNGFSH SVSSSSLDVG  240
VVPDGNSLSE ISYSFGRNLS QSTGDPIPSV PASSNSMSTA PQATQLCGMA REARVLRYRE  300
KRKNRKFEKT IRYASRKAYA ETRPRIKGRF AKRTEIELDA DVDADQIYGG AAFFAAAADS  360
QYGVVPTF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102982.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102982.10.0zinc finger protein CONSTANS-LIKE 5
SwissprotQ9FHH81e-108COL5_ARATH; Zinc finger protein CONSTANS-LIKE 5
TrEMBLW9RK130.0W9RK13_9ROSA; Zinc finger protein CONSTANS-LIKE 5
STRINGXP_010102982.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13023493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57660.19e-85CONSTANS-like 5
Publications ? help Back to Top
  1. Vercruyssen L, et al.
    ANGUSTIFOLIA3 binds to SWI/SNF chromatin remodeling complexes to regulate transcription during Arabidopsis leaf development.
    Plant Cell, 2014. 26(1): p. 210-29
    [PMID:24443518]