PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010102628.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

bHLH

Protein Properties

Length: 309aa MW: 34893 Da PI: 6.8934

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010102628.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.7	5.8e-10	237	282	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L +l P+ +k s a+ Le+AveYIk+Lq XP_010102628.1 237 SIAERVRRTRISERMRRLEDLFPNI----DKQTSIADKLELAVEYIKDLQ 282 689*******************5....588***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.376	231	281	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.53E-13	234	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.15E-9	235	286	No hit	No description
Gene3D	G3DSA:4.10.280.10	3.7E-11	236	293	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.3E-6	237	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-6	237	287	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 309 aa Download sequence Send to blast
MSVLHSSQNL MCSEMEVMMM DSSNNLACWP PSSPEVEMML ERYICNYGPS SSSLPSIFMK 60 EEEFSSDQES DHQAQHFDQA FLDRDGTTTI NVNTIDRNNL VRQSSSPPEF FSHLTPHNNG 120 FTAMRGDGRL GNDQLNFSSG SPTCSRKMPQ IAENGNDSNW DNNSSLNGLE RTRDHNDVKM 180 FSSSTALEIQ QQNTVLAHHL SLPKDFGMPS REKVLHFQGS VPCKIRAKRG FATHPRSIAE 240 RVRRTRISER MRRLEDLFPN IDKQTSIADK LELAVEYIKD LQKQVKTLAD TKANCSCSSK 300 QKQHSNPCG

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010102628.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010102628.1	0.0	transcription factor bHLH130
Swissprot	Q66GR3	1e-48	BH130_ARATH; Transcription factor bHLH130
TrEMBL	W9S7W9	0.0	W9S7W9_9ROSA; Uncharacterized protein
STRING	XP_010102628.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4005	33	59

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-47	bHLH family protein

Link Out ? help Back to Top
Entrez Gene	21394200

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]