PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102560.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family SBP
Protein Properties Length: 369aa    MW: 39482.2 Da    PI: 9.467
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102560.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP138.91.4e-4370145176
                     --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S- CS
             SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkk 76 
                     +CqvegC++dls+ak y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD++krsCrrrLa+hnerrrk+
  XP_010102560.1  70 RCQVEGCKVDLSDAKAYYSRHKVCGMHSKSPKVIVAGLEQRFCQQCSRFHQLPEFDQGKRSCRRRLAGHNERRRKP 145
                     6*************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.106.4E-3664132IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.50568145IPR004333Transcription factor, SBP-box
SuperFamilySSF1036123.01E-4169149IPR004333Transcription factor, SBP-box
PfamPF031109.3E-3371144IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008361Biological Processregulation of cell size
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0042127Biological Processregulation of cell proliferation
GO:0048653Biological Processanther development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MEIMGSTSSG GSSSSESLNG LKFGKKIYFE DVGPTGAPPK SGSGSSSSSS AATPPKKVRA  60
GPVQTGQPPR CQVEGCKVDL SDAKAYYSRH KVCGMHSKSP KVIVAGLEQR FCQQCSRFHQ  120
LPEFDQGKRS CRRRLAGHNE RRRKPPPGSL LSTRYESSSR VGSFLMDFSA YPRLAGRNAW  180
ATARVSERVP GNHATIPTGK FLPYPWQSSS ENPPSDLFLQ ASACGTSIPA SYGIPPLPSG  240
ECISVVADSS CALSLLSNQP WSSRNRPSSG LELHSLMNAQ GAPVAEPTAA PHGGPVNHFP  300
TTSWGVKSDM AGSSSHQILP DLGLGQISQP LTSQFSGELE LSQQSRRPFM EPGHSRDFDS  360
SGQHMHWSL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A1e-31711441184squamosa promoter binding protein-like 4
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00412DAPTransfer from AT3G57920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102560.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102560.10.0squamosa promoter-binding-like protein 14
TrEMBLW9RJ150.0W9RJ15_9ROSA; Squamosa promoter-binding-like protein 15
STRINGXP_010102560.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42083359
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57920.12e-61squamosa promoter binding protein-like 15