PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010102460.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 119aa MW: 13827.8 Da PI: 9.8265 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 34.7 | 3.2e-11 | 4 | 100 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgr.sef 90 f k l s++ +++ l++p + + + +++++++ t+++ ++g ++ + l+ r+++ ++ + GW +Fv+a +L++ D+v F ++r +e XP_010102460.1 4 FSKSL--SHSDRTQKLSIPIDWLGSLlpSIEQNSEATISVVERNGAEYCFVLRTRNRPHLkpVFQSHGWLQFVRARQLQVDDTVYFWKERRgNED 96 67888..66666777********999*966677889****************876666557688889*******************966654555 PP ..EE CS B3 91 elvv 94 v XP_010102460.1 97 IIGV 100 4445 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 9.0E-14 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.21E-11 | 3 | 95 | No hit | No description |
SuperFamily | SSF101936 | 5.69E-12 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 4.8E-8 | 4 | 94 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MTLFSKSLSH SDRTQKLSIP IDWLGSLLPS IEQNSEATIS VVERNGAEYC FVLRTRNRPH 60 LKPVFQSHGW LQFVRARQLQ VDDTVYFWKE RRGNEDIIGV QVRDRPNITF LMGHAIAFN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010102460.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9RIL2 | 6e-84 | W9RIL2_9ROSA; Uncharacterized protein | ||||
STRING | XP_010102460.1 | 9e-85 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17870 | 2 | 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 21390385 |