PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010102458.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14299.3 Da PI: 9.1184 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 32.4 | 1.6e-10 | 7 | 104 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-.....TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 3 kvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvlt.....kGWkeFvkangLkegDfvvFkldgr. 87 k+l+p dv + + +p + + + + + ++ ++++de+g + ++ l + ++ +++l+ +GW +Fv++ +L+eg++v F + XP_010102458.1 7 KTLSPDDVKDK--FHVPSNWVGTLfpnlE--QDSELPIQVRDETGSERRFVL--KTRR-GVYLKtvfqrRGWHKFVRDLDLREGETVYFWKEAVg 94 55655555544..6889999877789544..4455569**************..4444.4344445556********************844433 PP SEE..EEEEE CS B3 88 sefelvvkvf 97 + ++v+v+ XP_010102458.1 95 GRDIMRVQVR 104 4444566665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 5.57E-10 | 4 | 105 | No hit | No description |
SuperFamily | SSF101936 | 4.71E-13 | 4 | 95 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.0E-14 | 6 | 99 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 2.7E-7 | 12 | 104 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MASCYGKTLS PDDVKDKFHV PSNWVGTLFP NLEQDSELPI QVRDETGSER RFVLKTRRGV 60 YLKTVFQRRG WHKFVRDLDL REGETVYFWK EAVGGRDIMR VQVRDEPQFV RVFGVPLVVP 120 NE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010102458.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | W9RTT9 | 4e-84 | W9RTT9_9ROSA; Uncharacterized protein | ||||
STRING | XP_010102458.1 | 6e-85 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17870 | 2 | 4 |
Link Out ? help Back to Top | |
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Entrez Gene | 21390383 |