PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102406.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family HD-ZIP
Protein Properties Length: 844aa    MW: 92612 Da    PI: 6.2125
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102406.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.98.2e-192583357
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    k  ++t+eq+e+Le+l++ +++ps  +r++L +++    +++ +q+kvWFqNrR +ek+
  XP_010102406.1 25 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 83
                    5679*****************************************************97 PP
2START177.95.9e-561693772205
                     HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEEEE CS
           START   2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galqlm 94 
                     +aee+++e+++ka+ ++  Wv+++ +++g++++ +++ s++++g a+ra+g+v  +++  v+e+l+d++ W ++++++++++ +s+g  g+++l 
  XP_010102406.1 169 IAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPT-RVAEILKDRPSWFRDCRAVDVINMLSTGngGTIELL 262
                     7899******************************************************.8888888888************************** PP

                     EEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHHHHHH CS
           START  95 vaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwllrslv 185
                     +++l+a+++l+p Rdf+ +Ry+  l++g++v++++S++++q+ p+    +++vRae+l Sg+li+p+++g+s +++v+h+dl+ ++++++lr+l+
  XP_010102406.1 263 YMQLYAPTTLAPaRDFWLLRYTSVLEDGSLVVCERSLNNTQNGPSmppVQNFVRAEMLSSGYLIRPCEGGGSIIHVVDHIDLEPWSVPEVLRPLY 357
                     *******************************************9988899********************************************* PP

                     HHHHHHHHHHHHHHTXXXXX CS
           START 186 ksglaegaktwvatlqrqce 205
                     ks++  ++kt++a+l+++++
  XP_010102406.1 358 KSSTLLAQKTTTAALRHLRQ 377
                     ***************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007115.7262084IPR001356Homeobox domain
SMARTSM003895.2E-162288IPR001356Homeobox domain
SuperFamilySSF466897.7E-172488IPR009057Homeodomain-like
CDDcd000868.07E-172585No hitNo description
PfamPF000462.2E-162683IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.1E-182783IPR009057Homeodomain-like
CDDcd146861.53E-677116No hitNo description
PROSITE profilePS5084825.829159387IPR002913START domain
CDDcd088751.24E-78163378No hitNo description
SuperFamilySSF559614.67E-38168379No hitNo description
Gene3DG3DSA:3.30.530.201.4E-22168373IPR023393START-like domain
SMARTSM002342.7E-42168378IPR002913START domain
PfamPF018528.2E-54169377IPR002913START domain
PfamPF086701.4E-52703843IPR013978MEKHLA
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009733Biological Processresponse to auxin
GO:0010067Biological Processprocambium histogenesis
GO:0010072Biological Processprimary shoot apical meristem specification
GO:0010089Biological Processxylem development
GO:0045597Biological Processpositive regulation of cell differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0008289Molecular Functionlipid binding
Sequence ? help Back to Top
Protein Sequence    Length: 844 aa     Download sequence    Send to blast
MAVTAGSGCK EGGSKSSSIA MDNGKYVRYT PEQVEALERL YHDCPKPSSM RRQQLIRECP  60
ILSNIEPKQI KVWFQNRRCR EKQRKEASRL QAVNRKLSAM NKLLMEENDR LQKQVSQLVY  120
ENTYFRQQTQ NAPLATTDTS CESVVTSGQH HLTPQHPPRD ASPAGLLSIA EETLAEFLSK  180
ATGTAVEWVQ MPGMKPGPDS IGIVAISHGC TGVAARACGL VGLEPTRVAE ILKDRPSWFR  240
DCRAVDVINM LSTGNGGTIE LLYMQLYAPT TLAPARDFWL LRYTSVLEDG SLVVCERSLN  300
NTQNGPSMPP VQNFVRAEML SSGYLIRPCE GGGSIIHVVD HIDLEPWSVP EVLRPLYKSS  360
TLLAQKTTTA ALRHLRQISQ EVSQPNATGW GRRPAALRAL SQKLSKGFNE AVNGFTDEGW  420
TMLESDGIDD VTLLVNSSPS KMMGMNLPYA NGFPSASNSV LCAKASMLLQ NVPPAILLRF  480
LREHRSEWAD SNIDAYSAAA IKAVPCSLPV PRAGSFGGQV ILPLAYTIEH EEFMEVIKLE  540
NMGHYQDDMI MPVDIFLLQL CSGVDENAVG TCAELIFAPI DASFSDDAPI LPSGFRIIPL  600
DSGVDAPSPN RTLDLASALE VGHTGNRTSG DNAGNSGNRK SVMTIAFQFA FEMHLQESVA  660
AMARQYVRSI IASVQRVALA LSPSGFGSNV GLRPPPGTPE AQTLARWICQ SYRCYLGVEL  720
LKNEGSESIL KSLWHHSDAV LCCSLKALPV FTFANQAGLD MLETTLVALQ DITLEKIFDD  780
NGRKTLCSEF PQIMQQGFMC LQGGICMSSM GRPISYERAV AWKVLNEEES AHCICFMFIN  840
WSFV
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in the regulation of vascular development. May promote differentiation of precambial and cambial cells. {ECO:0000269|PubMed:11402194, ECO:0000269|PubMed:15598805}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102406.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. Repressed by miR165. {ECO:0000269|PubMed:17237362, ECO:0000269|PubMed:8575317}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102406.20.0homeobox-leucine zipper protein ATHB-8
SwissprotQ391230.0ATHB8_ARATH; Homeobox-leucine zipper protein ATHB-8
TrEMBLW9S7760.0W9S776_9ROSA; Homeobox-leucine zipper protein ATHB-8
STRINGXP_010102406.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19463387
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32880.10.0homeobox gene 8
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]
  2. Hategan L,Godza B,Kozma-Bognar L,Bishop GJ,Szekeres M
    Differential expression of the brassinosteroid receptor-encoding BRI1 gene in Arabidopsis.
    Planta, 2014. 239(5): p. 989-1001
    [PMID:24488524]
  3. Baima S, et al.
    Negative feedback regulation of auxin signaling by ATHB8/ACL5-BUD2 transcription module.
    Mol Plant, 2014. 7(6): p. 1006-1025
    [PMID:24777988]
  4. Kakehi J, et al.
    Mutations in ribosomal proteins, RPL4 and RACK1, suppress the phenotype of a thermospermine-deficient mutant of Arabidopsis thaliana.
    PLoS ONE, 2015. 10(1): p. e0117309
    [PMID:25625317]
  5. Jia X, et al.
    Functional plasticity of miR165/166 in plant development revealed by small tandem target mimic.
    Plant Sci., 2015. 233: p. 11-21
    [PMID:25711809]
  6. Liu S, et al.
    Expression of wild-type PtrIAA14.1, a poplar Aux/IAA gene causes morphological changes in Arabidopsis.
    Front Plant Sci, 2015. 6: p. 388
    [PMID:26082787]
  7. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]
  8. Yamazaki K, et al.
    Suppression of DELLA signaling induces procambial cell formation in culture.
    Plant J., 2018. 94(1): p. 48-59
    [PMID:29383774]