PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010102402.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 353aa    MW: 37253 Da    PI: 4.6102
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010102402.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA52.95.1e-17263294132
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrk 32 
                     C +C t kTp+WR gp g+ktLCnaCG++y++
  XP_010102402.1 263 CLHCATDKTPQWRTGPMGPKTLCNACGVRYKS 294
                     99*****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.308257293IPR000679Zinc finger, GATA-type
SMARTSM004016.3E-15257307IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.109.3E-15258296IPR013088Zinc finger, NHR/GATA-type
SuperFamilySSF577169.03E-13258294No hitNo description
CDDcd002022.91E-12262294No hitNo description
PfamPF003207.4E-15263295IPR000679Zinc finger, GATA-type
PROSITE patternPS003440263288IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MEAPEFYQNT AASFCPPFVP EKRQYSSDSK AVAGVGDHFL VEEFLDFSNE DAVIADAAFN  60
AVAGNSTNSS PVTVVDSCNS SNFSGCETNF LTDIGCQNFA DGQFSSELCV PAYDDLAELE  120
WVSNFVEESF SSEDLQRLQL ISGLKARNDV ESCHPETNQN NINSINIAST TNVNNGPIFN  180
SEVSVPAKAR SKRSRAPPCN WTSRLLLVSA TSSSSSSSPE QDVVVSVPPP VPPSTAVTAK  240
KTVKAAPKKK ESGTGPDGQG RKCLHCATDK TPQWRTGPMG PKTLCNACGV RYKSGAPPPS  300
QSDILADKAL ELAPEGSGAP TPEGFPQSST TTTAPPTTTT IHSSSSSSER NGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010102402.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010102402.20.0LOW QUALITY PROTEIN: GATA transcription factor 12
TrEMBLW9RR650.0W9RR65_9ROSA; GATA transcription factor 12
STRINGXP_010102402.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13643395
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25830.17e-34GATA transcription factor 12