PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010101660.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 225aa MW: 25776.7 Da PI: 9.5433 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.4 | 7.1e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifss+gklye++s XP_010101660.1 9 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCS 59 79***********************************************96 PP | |||||||
2 | K-box | 73.4 | 6.3e-25 | 83 | 163 | 10 | 89 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnell.leqieelqkkekelqe 89 ++++s++qe+ kLk+++e Lqr+qR+llGedL++Ls keL++Le+qLe+sl++iRs++ l+ ++q ++q + ++l + XP_010101660.1 83 PINDTQSSYQEYLKLKARVEVLQRSQRNLLGEDLGPLSSKELEHLENQLETSLRHIRSTRRILIdFSQRFQTQSMLDQLAD 163 55789*****************************************************99877745677777766666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.333 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.0E-41 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.54E-34 | 2 | 79 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.45E-45 | 2 | 78 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.5E-26 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.3E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-21 | 83 | 167 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 11.744 | 87 | 194 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRGRVELKR IENKINRQVT FAKRRNGLLK KAYELSVLCD AEVALIIFSS RGKLYEFCSG 60 SCMIKTLEKY QKYSYGSLEA TQPINDTQSS YQEYLKLKAR VEVLQRSQRN LLGEDLGPLS 120 SKELEHLENQ LETSLRHIRS TRRILIDFSQ RFQTQSMLDQ LADLQQRCPI PPHIEIGPNM 180 RLTNGAHLHV RDGLLPVKYN SVGPDEMNMS APAQIINGFA HGWML |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ox0_A | 6e-22 | 75 | 185 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_B | 6e-22 | 75 | 185 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_C | 6e-22 | 75 | 185 | 1 | 104 | Developmental protein SEPALLATA 3 |
4ox0_D | 6e-22 | 75 | 185 | 1 | 104 | Developmental protein SEPALLATA 3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010101660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ506157 | 1e-168 | KJ506157.1 Ficus carica MADS-box protein (MADS6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024024829.1 | 1e-120 | MADS-box protein EJ2 | ||||
Swissprot | Q39685 | 2e-91 | CMB1_DIACA; MADS-box protein CMB1 | ||||
TrEMBL | W9RRK3 | 1e-167 | W9RRK3_9ROSA; MADS-box protein | ||||
STRING | XP_010101660.1 | 1e-167 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF229 | 32 | 178 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G15800.1 | 2e-77 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21399729 |