PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010101639.1

Organism

Morus notabilis

Taxonomic ID

981085

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus

Family

Dof

Protein Properties

Length: 342aa MW: 37025.6 Da PI: 7.651

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010101639.1	genome	BGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	123.4	7.5e-39	32	91	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s XP_010101639.1 32 PQAALKCPRCDSLNTKFCYYNNYNLSQPRHFCKNCRRYWTKGGVLRNVPVGGGCRKTKRS 91 67899****************************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-27	32	86	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	3.8E-33	34	90	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.674	36	90	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	38	74	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence Send to blast
MQDIHSVGGA RFFAAGGGGD RRLRPHHHHQ NPQAALKCPR CDSLNTKFCY YNNYNLSQPR 60 HFCKNCRRYW TKGGVLRNVP VGGGCRKTKR SKPKASSATS AVAATANSTP PPPPSQDRKS 120 NSHSSSESSS LTAATNTTAT ATEAVSAPSA SAGSNLMKMH QESKFFVAQS SPNPSFEAPP 180 SAPPSLLEQA GSDCGIFSEI GSFTSLIASS ATGAMPNFDY GSISDVSISP FRLNQNHHHQ 240 HHQHQAQQSQ SWHEQSQKVT MSVADDQELK MQEITGGLLD QTVQVDLSVL HDSRSNGAGF 300 GSLGDWQQCG DQALFDLPNT VDQSYWSQSQ WTDQDHPSLY PP

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence Send to blast

MQDIHSVGGA RFFAAGGGGD RRLRPHHHHQ NPQAALKCPR CDSLNTKFCY YNNYNLSQPR  60
HFCKNCRRYW TKGGVLRNVP VGGGCRKTKR SKPKASSATS AVAATANSTP PPPPSQDRKS  120
NSHSSSESSS LTAATNTTAT ATEAVSAPSA SAGSNLMKMH QESKFFVAQS SPNPSFEAPP  180
SAPPSLLEQA GSDCGIFSEI GSFTSLIASS ATGAMPNFDY GSISDVSISP FRLNQNHHHQ  240
HHQHQAQQSQ SWHEQSQKVT MSVADDQELK MQEITGGLLD QTVQVDLSVL HDSRSNGAGF  300
GSLGDWQQCG DQALFDLPNT VDQSYWSQSQ WTDQDHPSLY PP

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00570	DAP	Transfer from AT5G60850	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010101639.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP009769	3e-52	AP009769.1 Lotus japonicus genomic DNA, clone: LjT13A22, TM1930, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010101639.1	0.0	dof zinc finger protein DOF5.4
TrEMBL	W9RP28	0.0	W9RP28_9ROSA; Dof zinc finger protein
STRING	XP_010101639.1	0.0	(Morus notabilis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5998	30	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60850.1	2e-33	OBF binding protein 4

Link Out ? help Back to Top
Entrez Gene	21399707