PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101625.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MYB
Protein Properties Length: 335aa    MW: 36591.4 Da    PI: 8.2022
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101625.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding49.69.4e-161462148
                     TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd +l++++ + G+g +W + ++++g++R++k+c++rw++yl
   XP_010101625.1 14 KGPWSPEEDAKLKEYIDKNGTGgNWIALPQKVGLRRCGKSCRLRWLNYL 62
                     79*********************************************97 PP
2Myb_DNA-binding42.91.1e-1369111246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g ++ eEd +++++++  G++ W+ Ia+ ++ gRt++++k++w++
   XP_010101625.1  69 GEFSDEEDRIIINLFANIGSR-WSIIAAQLP-GRTDNDIKNYWNT 111
                      789******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.497962IPR017930Myb domain
SuperFamilySSF466897.35E-2711109IPR009057Homeodomain-like
SMARTSM007177.9E-121364IPR001005SANT/Myb domain
PfamPF002493.5E-151462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.6E-241569IPR009057Homeodomain-like
CDDcd001678.15E-91662No hitNo description
PROSITE profilePS5129423.15863117IPR017930Myb domain
SMARTSM007175.0E-1367115IPR001005SANT/Myb domain
PfamPF002492.3E-1269111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.4E-2470117IPR009057Homeodomain-like
CDDcd001679.44E-1070113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDAKLKEYID KNGTGGNWIA LPQKVGLRRC GKSCRLRWLN  60
YLRPNIKHGE FSDEEDRIII NLFANIGSRW SIIAAQLPGR TDNDIKNYWN TKLKKKLMGI  120
INQPGQRKPH FSTNINISSS SSSSYSSSPL PSHSSYGSHY SQAVGGSYTT GFDPMAAFST  180
ISLSSPTTSG SFLQHQVSTQ ESLLSQMQQH YQVKDSSSSG GLIMFGAGGG SGGGHDQASC  240
SSSDGSCNNN QIGHGRSGTC NNYHNGVVIS QEDQKAIISD GNFVNGWGIS NQGSFLEYGL  300
EEIKQLISST STTCSNNNNF LFDENKTEER VLYYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A3e-26141177108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101625.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP2295791e-134KP229579.1 UNVERIFIED: Boehmeria nivea MYB transcription factor-like (MYB23) mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101625.10.0transcription factor RAX2
TrEMBLW9RG960.0W9RG96_9ROSA; Transcription factor RAX2
STRINGXP_010101625.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.13e-78myb domain protein 36