PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010101427.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family C3H
Protein Properties Length: 652aa    MW: 70959.9 Da    PI: 6.6677
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010101427.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.16.2e-08248268526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     +C+ f++ GtC+ Gd C +aHg
  XP_010101427.1 248 PCPEFRK-GTCQKGDACEYAHG 268
                     8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.205.8E-1816167IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484038.62E-1519159IPR020683Ankyrin repeat-containing domain
SMARTSM002480.00626191IPR002110Ankyrin repeat
PROSITE profilePS5029715.83161160IPR020683Ankyrin repeat-containing domain
CDDcd002045.95E-1363159No hitNo description
PfamPF127961.3E-966161IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.04596131IPR002110Ankyrin repeat
SMARTSM002480.04896128IPR002110Ankyrin repeat
SMARTSM003562.5E-4243269IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.197243270IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4248269IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-5248268IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.3E-4275307IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.315278302IPR000571Zinc finger, CCCH-type
SMARTSM0035635278301IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 652 aa     Download sequence    Send to blast
MESEFQKRND GFLSESSELL EFAASDDLDA FKSALEEKGF GVDEASFWYG RRLGSSKMGF  60
EERTPLMMAA MFGSTKVLKY IFESGKVDVN RSCGSDKVTA LHCAAAGGSS SSLEAVKLLL  120
EASADADCVN SYGNKPVDFL AAVSNSPLNS RRKVVEMLLK GESLVVGGNE EVEQQRAATP  180
EKKEYPIDVS LPDINNGIYG TDDFRMYSFK IKPCSRAYSH DWTECPFVHP GENARRRDPR  240
KYPYTCVPCP EFRKGTCQKG DACEYAHGVF ESWLHPAQYR TRLCKDETGC GRKVCFFAHK  300
PEELRPVYAS TGSAMPSPRS LVANPADMAA LSPLALGPSL PATSTPPMSP LAAASSPKNA  360
GLWQSKVSLT PPALQLPGSR LKTASCARDL NLEMELLGLQ SQSSQQQQQQ QQQLLDEISR  420
LSSPSFFGRI GDLKPTNLDD VFGSLDPSMF SQLQGLSLKA STPTQLQSPS GLQFRQNMNQ  480
LRASYPASLS SSSPVRKPSA YGLESSAGSV AAAVMNLRSS TFAKRSQSFI DRGAATTHLG  540
LTAAANSAPM MVSSGFSDWS SPDGKLDWAV QGDELNKLRK SASFGFRNNS NAGATPQAVR  600
PSAIDEPDVS WVHSLVKDVP SEKQHYQLNK GVHEVLPPWV EQLYIEQEQM VA
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010101427.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010101427.20.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLW9RQW10.0W9RQW1_9ROSA; Zinc finger CCCH domain-containing protein 29
STRINGXP_010101427.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein