PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010101273.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 210aa MW: 24002.4 Da PI: 10.1041 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 100.2 | 7.8e-32 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyeys+ XP_010101273.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYSN 59 79***********************************************95 PP | |||||||
2 | K-box | 80.9 | 3e-27 | 76 | 165 | 3 | 92 |
K-box 3 kssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 +ss +s e +a+++qqe+akL+++i++Lq+++Rhl+G+ L+sLs+keL+qLe++Le+++++iRskK+ l ++ + k e+++ ++ XP_010101273.1 76 SSSASSIIEINAQYYQQESAKLRQQIQMLQNSNRHLMGDALSSLSVKELKQLENRLERGITRIRSKKEMELENENVCIRTKISEVERLQQ 165 56666688999********************************************************************99999988776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 34.118 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-42 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 7.33E-43 | 2 | 73 | No hit | No description |
SuperFamily | SSF55455 | 3.92E-33 | 2 | 74 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.0E-27 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.6E-20 | 86 | 160 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 13.13 | 87 | 180 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0048316 | Biological Process | seed development | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0080155 | Biological Process | regulation of double fertilization forming a zygote and endosperm | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 210 aa Download sequence Send to blast |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSVLCD AEVALIVFSS RGRLYEYSNN 60 NIRSTIDRYK KANSDSSSAS SIIEINAQYY QQESAKLRQQ IQMLQNSNRH LMGDALSSLS 120 VKELKQLENR LERGITRIRS KKEMELENEN VCIRTKISEV ERLQQANMVS GSELTAIQAL 180 TSRNFFSPNL IEGPGPAFSH LDKKILHLGY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 3e-22 | 1 | 84 | 1 | 86 | MEF2C |
5f28_B | 3e-22 | 1 | 84 | 1 | 86 | MEF2C |
5f28_C | 3e-22 | 1 | 84 | 1 | 86 | MEF2C |
5f28_D | 3e-22 | 1 | 84 | 1 | 86 | MEF2C |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010101273.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024024542.1 | 1e-141 | agamous-like MADS-box protein AGL11 | ||||
Swissprot | F6I457 | 1e-124 | AG11C_VITVI; Agamous-like MADS-box protein AGL11 | ||||
TrEMBL | W9RN03 | 1e-151 | W9RN03_9ROSA; Agamous-like MADS-box protein AGL11 | ||||
STRING | XP_010101273.1 | 1e-152 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF684 | 29 | 102 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 1e-103 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21394885 |