PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010101240.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 730aa MW: 80054 Da PI: 6.7977 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 35 | 3.5e-11 | 310 | 366 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pseng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d + ++ k + g ++ +e+Aa+a++ a++k++g XP_010101240.1 310 SIYRGVTRHRWTGRYEAHLWDnSCR-RegQTrKGRQ-GGYDKEEKAARAYDLAALKYWG 366 57*******************4444.2455535555.779999**************98 PP | |||||||
2 | AP2 | 46.6 | 8.4e-15 | 409 | 460 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g XP_010101240.1 409 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 460 57****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.2E-8 | 310 | 366 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.05E-14 | 310 | 376 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.36E-19 | 310 | 376 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.9E-12 | 311 | 375 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 17.319 | 311 | 374 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.1E-22 | 311 | 380 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 312 | 323 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.0E-9 | 409 | 460 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.08E-24 | 409 | 470 | No hit | No description |
SuperFamily | SSF54171 | 1.18E-17 | 409 | 470 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.4E-18 | 410 | 469 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.045 | 410 | 468 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.5E-33 | 410 | 474 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 4.0E-6 | 450 | 470 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 730 aa Download sequence Send to blast |
MNWLGFSLSP QELPASNPHH HHDQDHSAQS TVVSRLGFNS DEISGNDVSG ECFDLTSDST 60 APSLNHLPPP FGILEAFNRN NHHSQDWNMK GLGMNSDTNY KTSSSSDFSM LMGNTQNPEN 120 QHQHQQQQPK LENFLGRHSF HHHDHTGVSY SPNPAAAADY MFPTTCGSLH VPSEAVDRGA 180 NNNSNSNNNN SSSIGLSMIK TWLRNQPAPT TQQENKNDVG ATTGNGACGN SNTATTANGQ 240 SSLSLSMSTG SQSSSPLPLL AAASGGESSS SDNNKQQQQP RTTAAGIDSQ TGAIEAVPRK 300 SIDTFGQRTS IYRGVTRHRW TGRYEAHLWD NSCRREGQTR KGRQGGYDKE EKAARAYDLA 360 ALKYWGTTTT TNFPISNYEK ELEEMKHMTR QEYVASLRRK SSGFSRGASI YRGVTRHHQH 420 GRWQARIGRV AGNKDLYLGT FSTQEEAAEA YDIAAIKFRG LNAVTNFDMS RYDVKSILES 480 STLPIGGAAK RLKDVEKAEM TVDGQRITDD DNMSSQLTDA ISNYGHHNTW PTLAFQQPNF 540 VMHNYPYGQR VWCKQEQDTT SDQHSSFPHD LHHQLQLSNT HNFIQPNSVL HNLMGIDHSS 600 PTIEHSSGSN SVMYGDNNNG NNYGNGTNST GGYVIPMATV IASDQGNNGF GDSTTSTTTH 660 DVFGTSTDAY HRSLYYLPQQ SQVGVVKASA YDQGSACNNW VPTAVPTLAP RSNNMAVCHG 720 TPTFTVWNDA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that promotes cell proliferation, differentiation and morphogenesis, especially during embryogenesis. {ECO:0000269|PubMed:12172019}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00610 | ChIP-seq | Transfer from AT5G17430 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010101240.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010101240.2 | 0.0 | AP2-like ethylene-responsive transcription factor BBM1 | ||||
Swissprot | Q8LSN2 | 1e-150 | BBM2_BRANA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
TrEMBL | W9RF39 | 0.0 | W9RF39_9ROSA; AP2-like ethylene-responsive transcription factor BBM2 | ||||
STRING | XP_010101240.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8186 | 28 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G17430.1 | 1e-124 | AP2 family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21389051 |