PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010101217.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Dof | ||||||||
Protein Properties | Length: 351aa MW: 38183.1 Da PI: 7.0675 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 127.9 | 3e-40 | 54 | 114 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++alkcprCdst+tkfCyynnyslsqPryfCk+CrryWtkGG+lrn+PvGgg+rknkk+s XP_010101217.1 54 QDQALKCPRCDSTHTKFCYYNNYSLSQPRYFCKTCRRYWTKGGTLRNIPVGGGCRKNKKVS 114 7899******************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 8.0E-27 | 48 | 108 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-33 | 55 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.189 | 58 | 112 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 60 | 96 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010067 | Biological Process | procambium histogenesis | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 351 aa Download sequence Send to blast |
MGLTSLQVCM DSSDWLQGTI HEDSSGMDSS SPISNDMLTC SRPLNMERRL RPQQDQALKC 60 PRCDSTHTKF CYYNNYSLSQ PRYFCKTCRR YWTKGGTLRN IPVGGGCRKN KKVSSKKPND 120 NNSPSVVGGQ SHIGHSGIIP GSSNSSTSHN TTELQLSFPD QVQFSHLTNL LGPHHPAFFD 180 QNVPRPAIDF MESKLEAIVG NSRNNYDFMG SNNNHNNGTS GHDLGMVGVG LGNFGGGGTS 240 TSSTHHHGSF EPNFHGICPP FGMSLDGNNG NGTFMDTCQR LMLPYEANDQ DGQNGILDVK 300 PNAKLLSLDW QDQGCSGDHH AGKDSFGYIN GLGSWSNVIN NYGPSTTNPL V |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00580 | DAP | Transfer from AT5G62940 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010101217.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010101217.1 | 0.0 | dof zinc finger protein DOF5.6 | ||||
TrEMBL | W9REU5 | 0.0 | W9REU5_9ROSA; Dof zinc finger protein | ||||
STRING | XP_010101217.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5092 | 34 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62940.1 | 2e-39 | Dof family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21398137 |