PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100899.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CO-like
Protein Properties Length: 387aa    MW: 42165.9 Da    PI: 6.0842
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100899.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box17.67.7e-061758439
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    r+C+++ +     +C+ ++ +lC+ C    H        H++
  XP_010100899.1 17 RVCDTCRSAACAVYCRADSAYLCAGCDARVHAAnrvasrHER 58
                    79******99******************99955567777766 PP
2zf-B_box27.47e-0960103441
        zf-B_box   4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 
                      +C+ +e+ ++ + C+ +   lC++C   +H+       H +vp
  XP_010100899.1  60 FVCEACERAPAAFICKADAASLCASCDADIHSAnplarrHHRVP 103
                     68*****************************6688999977776 PP
3CCT70.34.8e-24318361144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_010100899.1 318 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 361
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003362.8E-81461IPR000315B-box-type zinc finger
PROSITE profilePS5011910.3811461IPR000315B-box-type zinc finger
CDDcd000211.16E-71761No hitNo description
PROSITE profilePS5011911.06457104IPR000315B-box-type zinc finger
CDDcd000213.54E-860104No hitNo description
PfamPF006431.3E-660103IPR000315B-box-type zinc finger
SMARTSM003366.1E-962104IPR000315B-box-type zinc finger
PfamPF062037.6E-18318360IPR010402CCT domain
PROSITE profilePS5101716.648318360IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MMKEDTNGGN SSKNWARVCD TCRSAACAVY CRADSAYLCA GCDARVHAAN RVASRHERVF  60
VCEACERAPA AFICKADAAS LCASCDADIH SANPLARRHH RVPVLPISGC VYGPSAAAAA  120
AGEDDVFDDD NDEDETASWL LLNPIKAGIN NHQGINTNNN NNNNNNGSFL FGAEVDEYLD  180
LVEYNSSTTT GTDQFGDHHE LMNNQQMSSY GDPQKTYGGG GDSVVPVQCG DGKGQIMMPH  240
ISHGFQLGLE FDSPKSTYSN YNGSISHSVS ISSMDVSVVP DSTMSDISIS HPRPPKGTID  300
LFSGPAVQMP AQLTPMDREA RVLRYREKKK TRKFEKTIRY ASRKAYAETR PRIKGRFAKR  360
TDVEVEVDQM FSTTLMVDTG YGIVPSF
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100899.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3712444e-46DQ371244.1 Glycine max CONSTANS-like 2b (COL2b) mRNA, complete cds.
GenBankDQ3718984e-46DQ371898.1 Glycine max zinc finger protein CONSTANS-LIKE 2 (COL2c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010100899.10.0zinc finger protein CONSTANS-LIKE 2
SwissprotQ965021e-142COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLW9S2Z30.0W9S2Z3_9ROSA; Zinc finger protein CONSTANS-LIKE 2
STRINGXP_010100899.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38273352
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02380.11e-98CONSTANS-like 2
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]