PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100424.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 343aa    MW: 39184.1 Da    PI: 5.0097
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100424.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.52.5e-092863202155
                     HSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
        Homeobox  21 knrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                     k +yp+++++  LA+ +gL+++q+ +WF N+R ++
  XP_010100424.1 286 KWPYPTEADKNALAETTGLDQKQINNWFINQRKRH 320
                     569*****************************885 PP
2ELK28.24.4e-10240261122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     +LK++Llr ++g++++Lk EFs
  XP_010100424.1 240 DLKDRLLRRFGGHISTLKLEFS 261
                     69*******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012551.1E-2282126IPR005540KNOX1
PfamPF037906.5E-2284125IPR005540KNOX1
SMARTSM012563.1E-27134185IPR005541KNOX2
PfamPF037911.3E-25138184IPR005541KNOX2
PfamPF037897.0E-8240261IPR005539ELK domain
SMARTSM011883.9E-5240261IPR005539ELK domain
PROSITE profilePS512139.725240260IPR005539ELK domain
PROSITE profilePS5007112.762260323IPR001356Homeobox domain
SuperFamilySSF466894.15E-19261334IPR009057Homeodomain-like
SMARTSM003891.1E-12262327IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.604.3E-27265324IPR009057Homeodomain-like
CDDcd000861.70E-11269324No hitNo description
PfamPF059202.2E-17280319IPR008422Homeobox KN domain
PROSITE patternPS000270298321IPR017970Homeobox, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010073Biological Processmeristem maintenance
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDEMYGLQPT TATATATEYS DKALMSPENL ILPSEYQALL SSSAFRDRLP FFGSDEFLSA  60
ASAISEAASI TPDFQREEDV SRLIKAKIAS HPTYPRLLQA YIDCQKVGAP PEIASFLDEI  120
RRKNELYKRE SSIISTCLGA DPELDEFMET YCDMLVKYKS DLARPFDEAT TFLKKIETQL  180
SNLCTSATNT RGLSGISNRE KLIMFPFDKC GDDGAVSSEE EFSGGEVEGQ EPQLRVEDRD  240
LKDRLLRRFG GHISTLKLEF SKKKKKGKLP REARQTLLDW WNVHYKWPYP TEADKNALAE  300
TTGLDQKQIN NWFINQRKRH WKPSENMQFS VMDNLSGQFY RDD
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in meristem function. Contributes to the shoot apical meristem (SAM) maintenance and organ separation by controlling boundary establishment in embryo in a CUC1, CUC2 and STM-dependent manner. Involved in maintaining cells in an undifferentiated, meristematic state. Probably binds to the DNA sequence 5'-TGAC-3'. {ECO:0000269|PubMed:16798887}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100424.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Seems to be repressed by AS2 and AS1 but induced by STM, CUC1 and CUC2. {ECO:0000269|PubMed:11311158, ECO:0000269|PubMed:16798887}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023903.10.0homeobox protein knotted-1-like 6
SwissprotQ84JS61e-148KNAT6_ARATH; Homeobox protein knotted-1-like 6
TrEMBLW9RCT70.0W9RCT7_9ROSA; Homeobox protein knotted-1-like 6
STRINGXP_010100424.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.11e-118KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Khan M, et al.
    Repression of Lateral Organ Boundary Genes by PENNYWISE and POUND-FOOLISH Is Essential for Meristem Maintenance and Flowering in Arabidopsis.
    Plant Physiol., 2015. 169(3): p. 2166-86
    [PMID:26417006]