PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100260.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family CPP
Protein Properties Length: 961aa    MW: 104832 Da    PI: 8.263
Description CPP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100260.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCR43.37.4e-14142180241
             TCR   2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 
                     ++k+C+C++s+Clk+YCeCfaag +C+  C+C +C+N+ +
  XP_010100260.1 142 KQKQCKCRNSRCLKLYCECFAAGIYCDG-CNCLNCHNNVD 180
                     89**************************.********986 PP
2TCR50.54e-16226264139
             TCR   1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 
                     k++kgCnC+ks ClkkYCeCf+a+  Cse+CkC dCkN 
  XP_010100260.1 226 KHNKGCNCRKSGCLKKYCECFQANILCSENCKCVDCKNF 264
                     589***********************************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM011146.7E-17141181IPR033467Tesmin/TSO1-like CXC domain
PROSITE profilePS5163436.243142266IPR005172CRC domain
PfamPF036385.7E-11143178IPR005172CRC domain
SMARTSM011142.0E-19226267IPR033467Tesmin/TSO1-like CXC domain
PfamPF036381.2E-12229264IPR005172CRC domain
Sequence ? help Back to Top
Protein Sequence    Length: 961 aa     Download sequence    Send to blast
MEKSEAVPDF APKKLARQLD FTAAAACRAS ANVVFPEPEK TQVAVESQSL PKPSPSQSQS  60
QALPSQSQPQ KPTVSLAQLQ IKSQPMSSQT QLQSPLKPVQ QPWMNQRIPH PVHKIPIQTP  120
LSVQESPKSR PGIEEKDGTP KKQKQCKCRN SRCLKLYCEC FAAGIYCDGC NCLNCHNNVD  180
NETARKEAIG AVLERNPSAF RPKVSSSPRE SRDGREDLGD IQAAGKHNKG CNCRKSGCLK  240
KYCECFQANI LCSENCKCVD CKNFDGSEER KALFQEEHTA VYMQQAANAA INGAVGSSGY  300
GTPPLSRKRK SHELFFGLGA KDQPIHTTAR GQQGNQPTAS VATSPMLSGS VRKNASTLGS  360
SKLTYRSPLA DVLQPQDVKD LCSLLIVVSG EAAKTFAESR NKSSVASPTQ GRGESQEENG  420
VHDAVRSNPL EEKQADKDGT SDSRLDACNA QSDEPMSPGT LALMCDEKDT MFLAAGLPNG  480
GITQSENINK NPSSGSSYTE LYAEQENLIL TGFCNFLNRL ITRGSMKVTF HSQNCSVKVI  540
LVFQRLNENF VIGSDLRAFL SYFFLNISVT SDFQLQELNM MPERVSSREV FSSRVREDDA  600
EAVTSSVASI DSEDSLLCQV EDYADVSTST SQQEGPILID EGLVGQGYGV LPTGELSSMV  660
TDVNPSKIKP KAAMAAFSDA KINAHHFYFL IPTRNAMTHN PPPGHMTVFT RVKEFLYCYT  720
LRGSPGQTSF FYLASHSKSN LLVPPIVIEK TSSSHGWKSQ FFFLGGDFNS IRLTASVLLG  780
RRPSSANILV PPRPKLFGTA LGRVEQILAL PDSNRSSSVL NSPENQRLYG LQVDLPRLSL  840
PIMPPPELLQ GPASKMKYTL PSKQKKSKRS GSTKSTRAIA IKGASGSSWQ LDKGKDAEVV  900
ANLALLPTLE GPLLLPASRV IDPQFLALEV TLLNYLELEA LLKKDTSNKV SEEELHTLRT  960
H
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5fd3_A9e-341342752132Protein lin-54 homolog
5fd3_B9e-341342752132Protein lin-54 homolog
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1305310SRKRKS
2307311KRKSH
Functional Description ? help Back to Top
Source Description
UniProtPlays a role in development of both male and female reproductive tissues. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150355e-38AP015035.1 Vigna angularis var. angularis DNA, chromosome 2, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023852.10.0protein tesmin/TSO1-like CXC 5 isoform X2
SwissprotQ9SZD11e-139TCX5_ARATH; Protein tesmin/TSO1-like CXC 5
TrEMBLW9S1610.0W9S161_9ROSA; Uncharacterized protein
STRINGXP_010100260.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26263379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29000.11e-139Tesmin/TSO1-like CXC domain-containing protein