PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010100199.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 192aa MW: 21891.7 Da PI: 8.821 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.4 | 5.9e-19 | 8 | 63 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 r++++++++eq++ Le +F++++ p ++++ +A +lgL+ +qV +WFqNrRa+ + XP_010100199.1 8 RKNKRRISNEQVKSLEIMFQSDSRPESKTKRAIAGELGLQPCQVAIWFQNRRARSR 63 78999*************************************************98 PP | |||||||
2 | HD-ZIP_I/II | 105.7 | 3.6e-34 | 10 | 101 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +krr+s+eqvk+LE +F+++++ e++ K ++a eLglqp qva+WFqnrRAR +tkq+E++y+ Lk++y++l ++ e+L+ke+ eL+ +l+e XP_010100199.1 10 NKRRISNEQVKSLEIMFQSDSRPESKTKRAIAGELGLQPCQVAIWFQNRRARSRTKQIEREYSILKTSYNNLFSRVESLKKENLELNIQLRE 101 79************************************************************************************999876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.763 | 5 | 65 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.88E-16 | 6 | 66 | IPR009057 | Homeodomain-like |
SMART | SM00389 | 3.2E-17 | 7 | 69 | IPR001356 | Homeobox domain |
CDD | cd00086 | 5.87E-14 | 8 | 66 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 8 | 63 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 1.8E-17 | 8 | 63 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 40 | 63 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.2E-12 | 65 | 106 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 192 aa Download sequence Send to blast |
MNSMTCARKN KRRISNEQVK SLEIMFQSDS RPESKTKRAI AGELGLQPCQ VAIWFQNRRA 60 RSRTKQIERE YSILKTSYNN LFSRVESLKK ENLELNIQLR EVKTLLGMHH ESENSGFVKT 120 EEAEGGKKAI KSNGVTSHLL EGCKDKVGKD AEVVELAQSR DGSLTSSVNW SSFESCCYVN 180 ETSCSQWWEF LS |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010100199.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010100199.1 | 1e-140 | homeobox-leucine zipper protein ATHB-12 | ||||
TrEMBL | W9S105 | 1e-138 | W9S105_9ROSA; Homeobox-leucine zipper protein ATHB-7 | ||||
STRING | XP_010100199.1 | 1e-139 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16057 | 9 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G46680.1 | 4e-32 | homeobox 7 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21398447 |