PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | GATA | ||||||||
Protein Properties | Length: 155aa MW: 17531.4 Da PI: 4.3198 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 46.2 | 6.1e-15 | 106 | 136 | 4 | 34 |
GATA 4 CgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 C+t + p+WRrgp g+k+LCnaCG++y k++ XP_010100174.1 106 CRTQTPPMWRRGPLGPKSLCNACGIKYGKQE 136 ***************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00401 | 2.6E-8 | 95 | 146 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 9.98E-10 | 96 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 2.9E-12 | 97 | 137 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.13E-9 | 101 | 132 | No hit | No description |
PROSITE profile | PS50114 | 9.763 | 106 | 132 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 8.8E-13 | 106 | 136 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 155 aa Download sequence Send to blast |
MNNRSSAFSP VPWIQLNDYN NIFLNPNTTG TIMNNVNGTR RKNIINGMKR KCGDDGDDQM 60 LKAQAEVFVF DFGEEEEEEE EVDQDYHVVE IDDGDDANKC CSNIYCRTQT PPMWRRGPLG 120 PKSLCNACGI KYGKQEEILS RPQTGISDVE ARSET |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010100174.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023017.1 | 5e-89 | transcription factor stalky | ||||
TrEMBL | W9S0Y0 | 1e-112 | W9S0Y0_9ROSA; GATA transcription factor 29 | ||||
STRING | XP_010100174.1 | 1e-113 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13778 | 16 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G20750.1 | 9e-15 | GATA transcription factor 29 |
Link Out ? help Back to Top | |
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Entrez Gene | 21385031 |