PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010100106.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family MIKC_MADS
Protein Properties Length: 271aa    MW: 30712 Da    PI: 10.1144
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010100106.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF786.9e-251058250
                    ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    rien   rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gklye +
  XP_010100106.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELA 58
                    8*********************************************965 PP

2K-box41.74.9e-151602251378
           K-box  13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                     + e+ ++e++ Lk+eie Lq+ +  + G + ++++l+eLq Le++Le  + +iRs+K++ l+ +++
  XP_010100106.1 160 QVENAKTEISMLKQEIEVLQKGLSYMFGGGAGTMTLEELQVLEKNLEFWIYHIRSTKTDSLRGKMQ 225
                     68999******************************************************9987654 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.2E-35160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.464161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.59E-27175IPR002100Transcription factor, MADS-box
CDDcd002651.93E-39279No hitNo description
PRINTSPR004045.2E-26323IPR002100Transcription factor, MADS-box
PfamPF003192.5E-221056IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-263859IPR002100Transcription factor, MADS-box
PfamPF014866.7E-15160241IPR002487Transcription factor, K-box
PROSITE profilePS512979.636161258IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSA HGKLYELATK  60
GTMQGLMERY MKSTRGSLQA QADETMQTQS LFVHRPPSPG LRRSLCRTTT TPRSVDLCRL  120
PLTALPSPLA APLSLLSICH RRANCCVVIR RLTLLRVIAQ VENAKTEISM LKQEIEVLQK  180
GLSYMFGGGA GTMTLEELQV LEKNLEFWIY HIRSTKTDSL RGKMQMDIMS QEIQLLRNKI  240
EADQNTAALD IVPMTTNNPY QLTIQNEIFQ F
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010100106.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF7300926e-47KF730092.1 Breynia sp. CONN 198600075 clone BrAGL12 MADS-box transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023771.13e-87agamous-like MADS-box protein AGL12
TrEMBLW9RMB80.0W9RMB8_9ROSA; Agamous-like MADS-box protein AGL12
STRINGXP_010100106.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-40AGAMOUS-like 12