PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100106.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 271aa MW: 30712 Da PI: 10.1144 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 78 | 6.9e-25 | 10 | 58 | 2 | 50 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rien rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gklye + XP_010100106.1 10 RIENPVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELA 58 8*********************************************965 PP | |||||||
2 | K-box | 41.7 | 4.9e-15 | 160 | 225 | 13 | 78 |
K-box 13 kaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 + e+ ++e++ Lk+eie Lq+ + + G + ++++l+eLq Le++Le + +iRs+K++ l+ +++ XP_010100106.1 160 QVENAKTEISMLKQEIEVLQKGLSYMFGGGAGTMTLEELQVLEKNLEFWIYHIRSTKTDSLRGKMQ 225 68999******************************************************9987654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.2E-35 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.464 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 7.59E-27 | 1 | 75 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.93E-39 | 2 | 79 | No hit | No description |
PRINTS | PR00404 | 5.2E-26 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-22 | 10 | 56 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-26 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-26 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 6.7E-15 | 160 | 241 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 9.636 | 161 | 258 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 271 aa Download sequence Send to blast |
MARGKVQMRR IENPVHRQVT FCKRRAGLLK KAKELSVLCD AEIGVFIFSA HGKLYELATK 60 GTMQGLMERY MKSTRGSLQA QADETMQTQS LFVHRPPSPG LRRSLCRTTT TPRSVDLCRL 120 PLTALPSPLA APLSLLSICH RRANCCVVIR RLTLLRVIAQ VENAKTEISM LKQEIEVLQK 180 GLSYMFGGGA GTMTLEELQV LEKNLEFWIY HIRSTKTDSL RGKMQMDIMS QEIQLLRNKI 240 EADQNTAALD IVPMTTNNPY QLTIQNEIFQ F |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010100106.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF730092 | 6e-47 | KF730092.1 Breynia sp. CONN 198600075 clone BrAGL12 MADS-box transcription factor mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023771.1 | 3e-87 | agamous-like MADS-box protein AGL12 | ||||
TrEMBL | W9RMB8 | 0.0 | W9RMB8_9ROSA; Agamous-like MADS-box protein AGL12 | ||||
STRING | XP_010100106.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF7566 | 31 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G71692.1 | 1e-40 | AGAMOUS-like 12 |
Link Out ? help Back to Top | |
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Entrez Gene | 21397440 |