PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100082.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | AP2 | ||||||||
Protein Properties | Length: 224aa MW: 25042.9 Da PI: 10.6003 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 31.9 | 3.4e-10 | 48 | 84 | 2 | 42 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeA 42 +++GVr ++ +gr++AeIrd ++ ++r +l + tae+A XP_010100082.1 48 HFRGVRKRP-WGRFAAEIRDpWK----KTRKWLRTIHTAEGA 84 69*******.**********883....5************99 PP | |||||||
2 | AP2 | 43.9 | 5.9e-14 | 90 | 125 | 17 | 55 |
AP2 17 AeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 AeIrd ++ ++r +lg+f+taeeAa+a+++a+++l+g XP_010100082.1 90 AEIRDpWK----KTRKWLGTFDTAEEAARAYDEAARSLRG 125 9****883....5*************************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 2.12E-22 | 47 | 132 | No hit | No description |
PROSITE profile | PS51032 | 21.443 | 48 | 133 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.1E-29 | 48 | 139 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.18E-7 | 48 | 86 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 6.1E-13 | 48 | 86 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-9 | 48 | 125 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 49 | 60 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.77E-14 | 89 | 133 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.5E-21 | 89 | 133 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.0E-10 | 99 | 115 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 224 aa Download sequence Send to blast |
MAVDSLRLRK TSPLSMAASG EPQPEKPAVA ISKESSPSQL RGETKEAHFR GVRKRPWGRF 60 AAEIRDPWKK TRKWLRTIHT AEGAGRVVAA EIRDPWKKTR KWLGTFDTAE EAARAYDEAA 120 RSLRGPKAKT NFGHAPPIPI AIPIPPPHAL VVNGGEAFGD CVRFWRQPVY FDGGALPPPM 180 APVRSEYKGY KLENVDVVVS EHEKKMSKEK KPFLFDLNLP APLF |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010100082.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023747.1 | 1e-123 | ethylene-responsive transcription factor 8 | ||||
TrEMBL | W9RBQ9 | 1e-161 | W9RBQ9_9ROSA; Ethylene-responsive transcription factor 3 | ||||
STRING | XP_010100082.1 | 1e-162 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF330 | 34 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G50640.1 | 2e-18 | ethylene responsive element binding factor 3 |
Link Out ? help Back to Top | |
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Entrez Gene | 21389211 |