PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099875.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family TALE
Protein Properties Length: 442aa    MW: 48928.2 Da    PI: 6.3908
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099875.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.52e-073924242254
                     SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
        Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                      +yp++e++++L +++gL+ +q+ +WF N+R +
  XP_010099875.1 392 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 424
                     69*****************************87 PP
2ELK28.72.9e-10345366122
             ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                     ELKh+L+++Y+++++++++E++
  XP_010099875.1 345 ELKHELKQGYKEKIVDIREEIL 366
                     9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012553.9E-20179223IPR005540KNOX1
PfamPF037901.3E-17181222IPR005540KNOX1
SMARTSM012562.7E-28232287IPR005541KNOX2
PfamPF037916.1E-21236286IPR005541KNOX2
SMARTSM011886.1E-4345366IPR005539ELK domain
PfamPF037891.0E-6345366IPR005539ELK domain
PROSITE profilePS512139.969345365IPR005539ELK domain
PROSITE profilePS5007111.758365428IPR001356Homeobox domain
SMARTSM003899.0E-11367432IPR001356Homeobox domain
SuperFamilySSF466897.27E-16367430IPR009057Homeodomain-like
CDDcd000867.49E-12368429No hitNo description
Gene3DG3DSA:1.10.10.601.4E-24372429IPR009057Homeodomain-like
PfamPF059202.1E-17385424IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009416Biological Processresponse to light stimulus
GO:0009722Biological Processdetection of cytokinin stimulus
GO:0071345Biological Processcellular response to cytokine stimulus
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 442 aa     Download sequence    Send to blast
MAYHNHLSQE LNALHHFADH QSQQQQSQST LEVLTSSAKS AEQHQPLQAA PNWLNNALLR  60
THAAHFDGAN GGGGGNNNNS SSHVNNSNNN NFLNLHTTAS DSRGGGGGGT SNQWLTRQIL  120
QRNHSDVIDT VGDTMIAAAM SHDSGEMKVG DAADSLNGKS ESGVVVESGD GGVMNWQNAR  180
YKAEILSHPL YDQLLSAHVA CLRIATPVDQ LPRIDAQLAQ SQNVVAKYSA LGQAMVSDDK  240
ELDQFMTHYV LLLCSFKEQL QQHVRVHAME AVMACWEIEQ SLQSLTGVSP GEGTGATMSD  300
DEDDQVDSDA SLFDGSLDGP HDTMGFGPLI PTESERSLME RVRQELKHEL KQGYKEKIVD  360
IREEILRKRR AGKLPGDTTS VLKSWWQTHS KWPYPTEEDK ARLVQETGLQ LKQINNWFIN  420
QRKRNWHSNP STSTVLKSKR KR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1x2n_A2e-12368432872Homeobox protein PKNOX1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1421441RKRNWHSNPSTSTVLKSKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099875.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023599.10.0homeobox protein knotted-1-like 3 isoform X3
SwissprotO041360.0KNAP3_MALDO; Homeobox protein knotted-1-like 3
TrEMBLW9RB380.0W9RB38_9ROSA; Homeobox protein knotted-1-like 3
STRINGXP_010099875.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.20.0KNOTTED1-like homeobox gene 3