PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099792.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family ZF-HD
Protein Properties Length: 336aa    MW: 37964.4 Da    PI: 8.4406
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099792.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.43.1e-32114167458
     ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRreve 58 
                     +rY+eClkNhAas+G++a+DGCgEfmps geegt++alkC+AC+CHRnFHR+e +
  XP_010099792.1 114 IRYRECLKNHAASMGANATDGCGEFMPS-GEEGTIEALKCSACNCHRNFHRKEID 167
                     79*************************9.999********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047702.7E-29114166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257741.0E-23114168IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-31115166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.452116165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.604.1E-30262327IPR009057Homeodomain-like
SuperFamilySSF466893.36E-19262327IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-27266322IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MEISSSHQQA EAGEMPIPIN SAPYGDHGST TAHHMIHHHH HDHQPHNHMI KNNPSSSASA  60
LVVPQANIPS SNNNNINGGS TNPLLPTTTN TTLQDHDHHQ YHHVGPSKKQ VVIIRYRECL  120
KNHAASMGAN ATDGCGEFMP SGEEGTIEAL KCSACNCHRN FHRKEIDGSD HDHHDQYHHH  180
HQYMMRSRNK FILGSPGGQY HNPTMAARAQ LHHQHHMIMS YNNVMGSHHQ QLPSSDQSDD  240
QREDHDHHAG VGGVGILRPT PQGVMKKRIR TKFTQEQKEK MLNFAEKVGW KIQKQEESVV  300
QQFCQEIGVK RRVLKVWMHN NKHNLAKKII ILPSSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh5_A8e-232653241675ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00258DAPTransfer from AT2G02540Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099792.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4929606e-57FJ492960.1 Rhamnus alaternus microsatellite RaA117 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099792.10.0zinc-finger homeodomain protein 3
SwissprotO647227e-70ZHD3_ARATH; Zinc-finger homeodomain protein 3
TrEMBLW9RB400.0W9RB40_9ROSA; Uncharacterized protein
STRINGXP_010099792.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02540.12e-65homeobox protein 21
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]