PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010099559.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 291aa    MW: 31207.4 Da    PI: 6.3038
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010099559.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.21.7e-16202238135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++Cg ++  Tp++Rrgp+g+++LCnaCGl+++ +g+
  XP_010099559.1 202 CTHCGISSksTPMMRRGPSGPRSLCNACGLFWANRGT 238
                     *****99999***********************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5132015.04968103IPR010399Tify domain
SMARTSM009791.1E-1268103IPR010399Tify domain
PfamPF062001.6E-1371102IPR010399Tify domain
PfamPF062031.0E-15135177IPR010402CCT domain
PROSITE profilePS5101712.6135177IPR010402CCT domain
SMARTSM004011.5E-16196249IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.04196256IPR000679Zinc finger, GATA-type
SuperFamilySSF577164.75E-12198247No hitNo description
Gene3DG3DSA:3.30.50.101.9E-15201243IPR013088Zinc finger, NHR/GATA-type
PfamPF003203.2E-14202238IPR000679Zinc finger, GATA-type
CDDcd002025.30E-16202249No hitNo description
PROSITE patternPS003440202229IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007623Biological Processcircadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MPNQIDDDDD VSAGVGGGAE SIDNPHIRYD ASHTLDDANG GVAGGGVVDD VGHDPVYAGA  60
GHELVVHRSD GSSQLTLSFR GQVYVFDAVT PDKVQAVLLL LGGCEISPGA QGVGIPNQNH  120
RGVVDIPVRC SQPQRAASLN RFRQKRKERC FDKKVRYSVR QEVALRMQRN KGQFTSKKSE  180
GAYGWGNSQD SGQDDNPPET LCTHCGISSK STPMMRRGPS GPRSLCNACG LFWANRGTLR  240
DLSKKTQDQP PTPAEQGEGD ASDSNCETTI RTHNNLVPFS NGDSSALMAE Q
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00451DAPTransfer from AT4G24470Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010099559.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010099559.20.0GATA transcription factor 25
SwissprotQ9LRH62e-92GAT25_ARATH; GATA transcription factor 25
TrEMBLW9RIJ40.0W9RIJ4_9ROSA; GATA transcription factor 25
STRINGXP_010099559.10.0(Morus notabilis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28363368
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24470.28e-95GATA-type zinc finger protein with TIFY domain
Publications ? help Back to Top
  1. Brand LH, et al.
    Screening for protein-DNA interactions by automatable DNA-protein interaction ELISA.
    PLoS ONE, 2013. 8(10): p. e75177
    [PMID:24146751]