PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010099556.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 379aa MW: 41407.7 Da PI: 4.7596 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 49.6 | 5.4e-16 | 208 | 244 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C++Cg+++ Tp +Rrgp g++tLCnaCGl+++ kg+ XP_010099556.1 208 CQHCGVSEnnTPAMRRGPAGPRTLCNACGLMWANKGT 244 *******99*************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 12.942 | 70 | 105 | IPR010399 | Tify domain |
SMART | SM00979 | 4.2E-7 | 70 | 105 | IPR010399 | Tify domain |
Pfam | PF06200 | 3.9E-10 | 73 | 104 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.1E-14 | 138 | 179 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 12.65 | 138 | 180 | IPR010402 | CCT domain |
SMART | SM00401 | 2.5E-8 | 202 | 255 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 7.13E-11 | 206 | 250 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 3.2E-14 | 206 | 248 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 2.12E-15 | 207 | 251 | No hit | No description |
Pfam | PF00320 | 7.5E-14 | 208 | 244 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 208 | 235 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
MAAANPQPLQ ARPFEDDHMH RPIPVDDEDD DEYDDGSGGG CGNDGDDAME DLEETNVNSV 60 SVAEHGGVVM ASRTSELTLS FEGEVYVFPA VTPEKVQAVL LLLGGRDVPT GIPTIDVPYN 120 QNNRGVGDST KRSNLSRRIA SLVRFREKRK ERCFDKKIRY TVRKEVAQRM HRKNGQFASL 180 KESSGPSGWD LSQSVDGTNR PETVLRRCQH CGVSENNTPA MRRGPAGPRT LCNACGLMWA 240 NKGTLRDLRK GGRNLSVDHI ETETPIEIKP LIVEGEISGN QDEHGTSEDP SKTVTEGSND 300 PSVNPGKEFK STSIPLSVHW SLGNLHFHVV QDLHGANEDL ASTLPIGIVH SSANADEQEP 360 LPELSNPSDT DIDIPTNFD |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250, ECO:0000269|PubMed:14966217}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010099556.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023415.1 | 0.0 | GATA transcription factor 24 | ||||
Swissprot | Q8GXL7 | 8e-68 | GAT24_ARATH; GATA transcription factor 24 | ||||
TrEMBL | W9RAA3 | 0.0 | W9RAA3_9ROSA; GATA transcription factor 24 | ||||
STRING | XP_010099556.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3319 | 33 | 64 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 2e-71 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21394814 |
Publications ? help Back to Top | |||
---|---|---|---|
|