PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010099342.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 251aa MW: 28034.1 Da PI: 10.0841 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 84.8 | 5.1e-27 | 40 | 90 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ nr+vtfskRr g++KKA+ELSvLCd+e+ +i+fs +g+lye+ss XP_010099342.1 40 KRIEDRHNRHVTFSKRRVGLMKKANELSVLCDVEIGLIVFSGSGNLYEFSS 90 79***********************************************96 PP | |||||||
2 | K-box | 18.5 | 8.3e-08 | 182 | 222 | 43 | 83 |
K-box 43 LesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83 +e+L+ keL ++e +L l++ R +K++l++e ++ l +k XP_010099342.1 182 VEQLTTKELTNIEGNLGALLRETRLRKTQLMMETLSALAEK 222 689*******************************9998877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 5.8E-37 | 32 | 91 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 3.53E-27 | 32 | 102 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 29.941 | 32 | 92 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 4.16E-31 | 33 | 99 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 34 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-26 | 34 | 54 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-24 | 41 | 88 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-26 | 54 | 69 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.4E-26 | 69 | 90 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.1E-5 | 182 | 222 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MRIRRCHMSN PKSPVGKENQ GKVRVCAIGK SMGRGKVSMK RIEDRHNRHV TFSKRRVGLM 60 KKANELSVLC DVEIGLIVFS GSGNLYEFSS SHRLEDLIEE TISKAKGAFV VDRQISDVVL 120 MANQVVEDYQ WGGSLGKTVE RYRTYNEEFA VKTADKPKKS LTDSISGFRS AELLEAMSNL 180 NVEQLTTKEL TNIEGNLGAL LRETRLRKTQ LMMETLSALA EKIGETIGGQ GGSGLNRQND 240 QRRGQELQLI S |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6byy_A | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
6byy_B | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
6byy_C | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
6byy_D | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
6bz1_A | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
6bz1_B | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
6bz1_C | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
6bz1_D | 1e-18 | 32 | 91 | 1 | 60 | MEF2 CHIMERA |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010099342.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024023309.1 | 1e-144 | truncated transcription factor CAULIFLOWER A isoform X2 | ||||
TrEMBL | W9R9U0 | 0.0 | W9R9U0_9ROSA; Agamous-like MADS-box protein AGL8 | ||||
STRING | XP_010099342.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60910.1 | 6e-29 | AGAMOUS-like 8 |
Link Out ? help Back to Top | |
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Entrez Gene | 21392504 |