PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010098958.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 495aa MW: 54261.9 Da PI: 7.3816 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 101.2 | 6.6e-32 | 276 | 331 | 1 | 56 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 k+r++W+p+LH+rFv+a++ LGGs++AtPk+i+elmkv+gLt+++vkSHLQkYRl+ XP_010098958.1 276 KARRCWSPDLHRRFVNALQMLGGSQVATPKQIRELMKVEGLTNDEVKSHLQKYRLH 331 68****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.78E-17 | 273 | 334 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 12.543 | 273 | 333 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.7E-28 | 274 | 334 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 1.6E-26 | 276 | 331 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.9E-7 | 278 | 329 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009266 | Biological Process | response to temperature stimulus | ||||
GO:0009740 | Biological Process | gibberellic acid mediated signaling pathway | ||||
GO:0010452 | Biological Process | histone H3-K36 methylation | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:1903507 | Biological Process | negative regulation of nucleic acid-templated transcription | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 495 aa Download sequence Send to blast |
MASPSELSLD CKPHSYSMLL KSFADHNQQP HDQTQKLEDF LSRLEEERLK IDAFKRELPL 60 CMQLLTNAVE SSRQQLQAYR SANNQGPIRP VLEEFIPLKT SSSEGSEKTT NTISDKANWM 120 TSAQLWSQTS EGLTKPQITT SSINNTSQKD QSDHISFNMS PKLALDNKQR NGGAFLPFSK 180 DQNSCPRAPL PELALSSAEK DVEDKKCFEG DQNGQRRESC GKFGNNNRVG VVIEQGKGSG 240 NISEGQTNNS STNNNNNNNN NGSNITTSNS NQTHRKARRC WSPDLHRRFV NALQMLGGSQ 300 VATPKQIREL MKVEGLTNDE VKSHLQKYRL HTRRPSPSPQ SAGAPAPQLV VLGGIWVPPE 360 YASAAAAAHG GAPAALYSPH PASHAPPHYC APPMPQDFYA SPAPASPPPM PHHHQLHHHA 420 LHHQLHMYKA TSQIHSSPES DVRGAGDRSE SIEDGKSESS SWKGESGENG GERKGLAALR 480 EDGEESNGSE ITLKF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4r_A | 2e-14 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 2e-14 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 2e-14 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 2e-14 | 276 | 329 | 1 | 54 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as a flowering repressor, directly repressing FT expression in a dosage-dependent manner in the leaf vasculature. {ECO:0000269|PubMed:25132385}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00261 | DAP | Transfer from AT2G03500 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010098958.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Up-regulated by SVP. Down-regulated by high temperature and gibberellic acid treatment. Not regulated by photoperiod, circadian rhythm under long days or vernalization. {ECO:0000269|PubMed:25132385}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010098958.1 | 0.0 | myb family transcription factor EFM | ||||
Swissprot | Q9ZQ85 | 1e-133 | EFM_ARATH; Myb family transcription factor EFM | ||||
TrEMBL | W9R8R3 | 0.0 | W9R8R3_9ROSA; Two-component response regulator | ||||
STRING | XP_010098958.1 | 0.0 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5466 | 34 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G03500.1 | 1e-105 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Entrez Gene | 21408304 |
Publications ? help Back to Top | |||
---|---|---|---|
|