PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010098876.1
Organism
Morus notabilis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
Family GATA
Protein Properties Length: 352aa    MW: 38845.9 Da    PI: 6.0674
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010098876.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.8e-16249278433
            GATA   4 CgttkTplWRrgpdgnktLCnaCGlyyrkk 33 
                     C+t +Tp+WRrgp g+k+LCnaCG++y k+
  XP_010098876.1 249 CRTQTTPMWRRGPLGPKSLCNACGIKYGKQ 278
                     ***************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004012.4E-11238292IPR000679Zinc finger, GATA-type
SuperFamilySSF577162.95E-10239278No hitNo description
Gene3DG3DSA:3.30.50.107.1E-13240287IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.20E-10244275No hitNo description
PfamPF003204.9E-14249278IPR000679Zinc finger, GATA-type
PROSITE profilePS5011410.554249275IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MRRGHKIGVG PTLSQKHYSG ASPSSVDSYS DATSSAQPNP LNLESLLPPS DDDNSDDDSA  60
VGDAAPMQYW QYGHNNNMVS GDHNTGNNNM VINNTGGPNN NYFGRFNQTG INMGQITKRT  120
GAEADQILSS MEPQMPSLPN SSSFNAIMNN RSSAFSPVPW IQLNDYNNIF LNPNTTGTIM  180
NNVNGTRRKN IINGMKRKRG DDGDDQMLQA QAEAFVFDFG EEEEVDQDHD VVEIDDGDDA  240
NKCCSNIYCR TQTTPMWRRG PLGPKSLCNA CGIKYGKQEG IWRALEIAAA KARNSSGTSN  300
PKGRRLKRIR PEETQVDTTL KERRFEEGIS KGVEEAAKPR KVPRKFNDFV VA
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010098876.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024023017.11e-176transcription factor stalky
TrEMBLW9RX770.0W9RX77_9ROSA; GATA transcription factor 29
STRINGXP_010098876.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20750.15e-14GATA transcription factor 29